Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093, USA.
Acc Chem Res. 2010 May 18;43(5):661-72. doi: 10.1021/ar900273t.
Proteins are nature's premier building blocks for constructing sophisticated nanoscale architectures that carry out complex tasks and chemical transformations. Some 70%-80% of all proteins are thought to be permanently oligomeric; that is, they are composed of multiple proteins that are held together in precise spatial organization through noncovalent interactions. Although it is of great fundamental interest to understand the physicochemical basis of protein self-assembly, the mastery of protein-protein interactions (PPIs) would also allow access to novel biomaterials with nature's favorite and most versatile building block. In this Account, we describe a new approach we have developed with this possibility in mind, metal-directed protein self-assembly (MDPSA), which utilizes the strength, directionality, and selectivity of metal-ligand interactions to control PPIs. At its core, MDPSA is inspired by supramolecular coordination chemistry, which exploits metal coordination for the self-assembly of small molecules into discrete, more-or-less predictable higher order structures. Proteins, however, are not exactly small molecules or simple metal ligands: they feature extensive, heterogeneous surfaces that can interact with each other and with metal ions in unpredictable ways. We begin by first describing the challenges of using entire proteins as molecular building blocks. We follow with an examination of our work on a model protein (cytochrome cb(562)), highlighting challenges toward establishing ground rules for MDPSA as well as progress in overcoming these challenges. Proteins are also nature's metal ligands of choice. In MDPSA, once metal ions guide proteins into forming large assemblies, they are by definition embedded within extensive interfaces formed between protein surfaces. These complex surfaces make an inorganic chemist's life somewhat difficult, yet they also provide a wide platform to modulate the metal coordination environment through distant, noncovalent interactions, exactly as natural metalloproteins and enzymes do. We describe our computational and experimental efforts toward restructuring the noncovalent interaction network formed between proteins surrounding the interfacial metal centers. This approach, of metal templating followed by the redesign of protein interfaces (metal-templated interface redesign, MeTIR), not only provides a route to engineer de novo PPIs and novel metal coordination environments but also suggests possible parallels with the evolution of metalloproteins.
蛋白质是构建执行复杂任务和化学转化的复杂纳米结构的天然首选构建块。据认为,大约 70%-80%的蛋白质是永久性寡聚的,即它们由多个蛋白质组成,这些蛋白质通过非共价相互作用保持在精确的空间组织中。尽管了解蛋白质自组装的物理化学基础具有重要的基础意义,但掌握蛋白质-蛋白质相互作用(PPIs)也将使人们能够获得具有天然最受欢迎和最通用构建块的新型生物材料。在本报告中,我们描述了一种我们考虑到这种可能性而开发的新方法,即金属指导的蛋白质自组装(MDPSA),它利用金属-配体相互作用的强度、方向性和选择性来控制 PPIs。MDPSA 的核心灵感来自超分子配位化学,它利用金属配位将小分子自组装成离散的、或多或少可预测的更高阶结构。然而,蛋白质并不是真正的小分子或简单的金属配体:它们具有广泛的、异构的表面,可以以不可预测的方式相互作用,并与金属离子相互作用。我们首先描述了使用整个蛋白质作为分子构建块所面临的挑战。然后,我们研究了我们对模型蛋白(细胞色素 cb(562))的工作,强调了为 MDPSA 建立基本规则的挑战以及克服这些挑战的进展。蛋白质也是天然金属配体的首选。在 MDPSA 中,一旦金属离子引导蛋白质形成大的组装体,它们就被定义为嵌入在蛋白质表面之间形成的广泛界面内。这些复杂的表面使无机化学家的生活有些困难,但它们也为通过远程非共价相互作用来调节金属配位环境提供了一个广泛的平台,这与天然金属蛋白和酶的作用完全相同。我们描述了我们在围绕界面金属中心的蛋白质周围形成的非共价相互作用网络的结构重排方面的计算和实验努力。这种方法,即金属模板化,然后重新设计蛋白质界面(金属模板化界面重设计,MeTIR),不仅为工程从头设计新的 PPIs 和新型金属配位环境提供了一种途径,而且还暗示了与金属蛋白进化的可能相似之处。