• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过验证来重构蛋白质组学。

Restructuring proteomics through verification.

机构信息

Office of Cancer Clinical Proteomics Research, Center for Strategic Scientific Initiative, National Cancer Institute, NIH, 31 Center Drive, MS 2590, Bethesda, MD 20892, USA.

出版信息

Biomark Med. 2010 Dec;4(6):799-803. doi: 10.2217/bmm.10.92.

DOI:10.2217/bmm.10.92
PMID:21133699
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3041639/
Abstract

Proteomics technologies have revolutionized cell biology and biochemistry by providing powerful new tools to characterize complex proteomes, multiprotein complexes and post-translational modifications. Although proteomics technologies could address important problems in clinical and translational cancer research, attempts to use proteomics approaches to discover cancer biomarkers in biofluids and tissues have been largely unsuccessful and have given rise to considerable skepticism. The National Cancer Institute has taken a leading role in facilitating the translation of proteomics from research to clinical application, through its Clinical Proteomic Technologies for Cancer. This article highlights the building of a more reliable and efficient protein biomarker development pipeline that incorporates three steps: discovery, verification and qualification. In addition, we discuss the merits of multiple reaction monitoring mass spectrometry, a multiplex targeted proteomics platform, which has emerged as a potentially promising, high-throughput protein biomarker measurements technology for preclinical 'verification'.

摘要

蛋白质组学技术通过提供强大的新工具来描述复杂的蛋白质组、多蛋白复合物和翻译后修饰,彻底改变了细胞生物学和生物化学。尽管蛋白质组学技术可以解决临床和转化癌症研究中的重要问题,但试图使用蛋白质组学方法在生物体液和组织中发现癌症生物标志物的尝试在很大程度上并不成功,并且引起了相当大的怀疑。美国国立癌症研究所通过其临床蛋白质组癌症技术,在促进蛋白质组学从研究到临床应用的转化方面发挥了主导作用。本文重点介绍了建立一个更可靠和有效的蛋白质生物标志物开发管道,该管道包含三个步骤:发现、验证和资格。此外,我们还讨论了多重反应监测质谱法的优点,这是一种多重靶向蛋白质组学平台,它已成为一种有前途的高通量蛋白质生物标志物测量技术,可用于临床前的“验证”。

相似文献

1
Restructuring proteomics through verification.通过验证来重构蛋白质组学。
Biomark Med. 2010 Dec;4(6):799-803. doi: 10.2217/bmm.10.92.
2
Reconstructing the pipeline by introducing multiplexed multiple reaction monitoring mass spectrometry for cancer biomarker verification: an NCI-CPTC initiative perspective.通过引入多重反应监测质谱法重建管道以验证癌症生物标志物:NCI-CPTC 计划的观点。
Proteomics Clin Appl. 2010 Dec;4(12):904-14. doi: 10.1002/prca.201000057. Epub 2010 Nov 22.
3
The path to clinical proteomics research: integration of proteomics, genomics, clinical laboratory and regulatory science.临床蛋白质组学研究之路:蛋白质组学、基因组学、临床实验室与监管科学的整合
Korean J Lab Med. 2011 Apr;31(2):61-71. doi: 10.3343/kjlm.2011.31.2.61.
4
Targeted and Untargeted Proteomics Approaches in Biomarker Development.靶向和非靶向蛋白质组学方法在生物标志物开发中的应用。
Proteomics. 2020 May;20(9):e1900029. doi: 10.1002/pmic.201900029. Epub 2020 Jan 30.
5
Analytical validation of protein-based multiplex assays: a workshop report by the NCI-FDA interagency oncology task force on molecular diagnostics.蛋白质多重分析检测方法的分析验证:NCI-FDA 肿瘤分子诊断跨部门工作组的研讨会报告。
Clin Chem. 2010 Feb;56(2):237-43. doi: 10.1373/clinchem.2009.136416. Epub 2009 Dec 10.
6
Toward an integrated pipeline for protein biomarker development.迈向蛋白质生物标志物开发的综合流程。
Biochim Biophys Acta. 2015 Jun;1854(6):677-86. doi: 10.1016/j.bbapap.2014.09.006. Epub 2014 Sep 11.
7
Qualification and Verification of Protein Biomarker Candidates.蛋白质生物标志物候选物的鉴定与验证
Adv Exp Med Biol. 2016;919:493-514. doi: 10.1007/978-3-319-41448-5_23.
8
Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications.基于液相色谱-质谱联用技术的蛋白质组学分析在临床应用中的进展与挑战
Mol Cell Proteomics. 2006 Oct;5(10):1727-44. doi: 10.1074/mcp.M600162-MCP200. Epub 2006 Aug 3.
9
Targeted mass spectrometry approaches for protein biomarker verification.靶向质谱法在蛋白质生物标志物验证中的应用。
J Proteomics. 2011 Nov 18;74(12):2650-9. doi: 10.1016/j.jprot.2011.04.011. Epub 2011 Apr 21.
10
Mass-spectrometry-based proteomics: from single cells to clinical applications.基于质谱的蛋白质组学:从单细胞到临床应用
Nature. 2025 Feb;638(8052):901-911. doi: 10.1038/s41586-025-08584-0. Epub 2025 Feb 26.

引用本文的文献

1
Mass spectrometry-assisted gel-based proteomics in cancer biomarker discovery: approaches and application.基于质谱的凝胶蛋白质组学在癌症生物标志物发现中的应用:方法与应用。
Theranostics. 2017 Aug 18;7(14):3559-3572. doi: 10.7150/thno.20797. eCollection 2017.
2
The Role of Proteomics in Biomarker Development for Improved Patient Diagnosis and Clinical Decision Making in Prostate Cancer.蛋白质组学在前列腺癌生物标志物开发中的作用,以改善患者诊断和临床决策。
Diagnostics (Basel). 2016 Jul 18;6(3):27. doi: 10.3390/diagnostics6030027.
3
Measurement of glycosylated alpha-fetoprotein improves diagnostic power over the native form in hepatocellular carcinoma.糖基化甲胎蛋白的检测比天然形式的甲胎蛋白在肝细胞癌诊断中具有更高的诊断效能。
PLoS One. 2014 Oct 13;9(10):e110366. doi: 10.1371/journal.pone.0110366. eCollection 2014.
4
Proteogenomic convergence for understanding cancer pathways and networks.基于蛋白质基因组学的癌症通路和网络理解
Clin Proteomics. 2014 Jun 1;11(1):22. doi: 10.1186/1559-0275-11-22. eCollection 2014.
5
Mass spectrometry in cancer biomarker research: a case for immunodepletion of abundant blood-derived proteins from clinical tissue specimens.质谱技术在癌症生物标志物研究中的应用:从临床组织标本中免疫去除丰富的血液衍生蛋白的案例。
Biomark Med. 2014;8(2):269-86. doi: 10.2217/bmm.13.101.
6
Statistical design for biospecimen cohort size in proteomics-based biomarker discovery and verification studies.基于蛋白质组学的生物标志物发现和验证研究中生物样本队列大小的统计设计。
J Proteome Res. 2013 Dec 6;12(12):5383-94. doi: 10.1021/pr400132j. Epub 2013 Oct 28.
7
A targeted proteomics-based pipeline for verification of biomarkers in plasma.基于靶向蛋白质组学的血浆生物标志物验证策略。
Nat Biotechnol. 2011 Jun 19;29(7):625-34. doi: 10.1038/nbt.1900.

本文引用的文献

1
The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline.生物标志物发现与临床验证之间的界面:蛋白质生物标志物流程中的焦油坑。
Proteomics Clin Appl. 2008 Oct 1;2(10-11):1386-1402. doi: 10.1002/prca.200780174.
2
Genomic medicine--an updated primer.基因组医学——最新入门指南。
N Engl J Med. 2010 May 27;362(21):2001-11. doi: 10.1056/NEJMra0907175.
3
Super-SILAC for tumors and tissues.用于肿瘤和组织的超级稳定同位素标记氨基酸定量蛋白质组学技术
Nat Methods. 2010 May;7(5):361-2. doi: 10.1038/nmeth0510-361.
4
Approaches to biomarkers in human colorectal cancer: looking back, to go forward.人类结直肠癌生物标志物的研究方法:回顾过去,展望未来。
Biomark Med. 2009 Aug 1;3(4):385-396. doi: 10.2217/BMM.09.33.
5
Comparison of multiplex immunoassay platforms.多重免疫分析平台的比较。
Clin Chem. 2010 Feb;56(2):314-8. doi: 10.1373/clinchem.2009.135087. Epub 2009 Dec 18.
6
The bottleneck in the cancer biomarker pipeline and protein quantification through mass spectrometry-based approaches: current strategies for candidate verification.基于质谱的癌症生物标志物管道和蛋白质定量的瓶颈:候选验证的当前策略。
Clin Chem. 2010 Feb;56(2):212-22. doi: 10.1373/clinchem.2009.127019. Epub 2009 Dec 10.
7
Analytical validation of protein-based multiplex assays: a workshop report by the NCI-FDA interagency oncology task force on molecular diagnostics.蛋白质多重分析检测方法的分析验证:NCI-FDA 肿瘤分子诊断跨部门工作组的研讨会报告。
Clin Chem. 2010 Feb;56(2):237-43. doi: 10.1373/clinchem.2009.136416. Epub 2009 Dec 10.
8
Protein-based multiplex assays: mock presubmissions to the US Food and Drug Administration.基于蛋白质的多重分析检测:向美国食品和药物管理局进行的模拟预申报。
Clin Chem. 2010 Feb;56(2):165-71. doi: 10.1373/clinchem.2009.140087. Epub 2009 Dec 10.
9
Up-regulated proteins in the fluid bathing the tumour cell microenvironment as potential serological markers for early detection of cancer of the breast.肿瘤细胞微环境中液体中上调的蛋白质作为乳腺癌早期检测的潜在血清标志物。
Mol Oncol. 2010 Feb;4(1):65-89. doi: 10.1016/j.molonc.2009.11.003. Epub 2009 Nov 23.
10
Quantitative serum proteomics using dual stable isotope coding and nano LC-MS/MSMS.双重稳定同位素编码结合纳升液相色谱-串联质谱技术的血清蛋白质组定量分析。
J Proteome Res. 2009 Dec;8(12):5412-22. doi: 10.1021/pr900158n.