• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

自由基S-腺苷甲硫氨酸酶的作用机制与功能多样性

Mechanistic and functional versatility of radical SAM enzymes.

作者信息

Booker Squire J, Grove Tyler L

出版信息

F1000 Biol Rep. 2010 Jul 14;2:52. doi: 10.3410/B2-52.

DOI:10.3410/B2-52
PMID:21152342
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2996862/
Abstract

Enzymes of the radical SAM (RS) superfamily catalyze a diverse assortment of reactions that proceed via intermediates containing unpaired electrons. The radical initiator is the common metabolite S-adenosyl-l-methionine (SAM), which is reductively cleaved to generate a 5'-deoxyadenosyl 5'-radical, a universal and obligate intermediate among enzymes within this class. A bioinformatics study that appeared in 2001 indicated that this superfamily contained over 600 members, many catalyzing reactions that were rich in novel chemical transformations. Since that seminal study, the RS superfamily has grown immensely, and new details about the scope of reactions and biochemical pathways in which its members participate have emerged. This review will highlight only a few of the most significant findings from the past 2-3 years, focusing primarily on: RS enzymes involved in complex metallocofactor maturation; characterized RS enzymes that lack the canonical CxxxCxxC motif; RS enzymes containing multiple iron-sulfur clusters; RS enzymes catalyzing reactions with compelling medical implications; and the energetics and mechanism of generating the 5'-deoxyadenosyl radical. A number of significant studies of RS enzymes will unfortunately be omitted, and it is hoped that the reader will access the relevant literature - particularly a number of superb review articles recently written on the subject - to acquire a deeper appreciation of this class of enzymes.

摘要

自由基S-腺苷甲硫氨酸(RS)超家族的酶催化各种各样的反应,这些反应通过含有未成对电子的中间体进行。自由基引发剂是常见的代谢物S-腺苷-L-甲硫氨酸(SAM),它被还原裂解生成5'-脱氧腺苷5'-自由基,这是该类酶中普遍且必不可少的中间体。2001年发表的一项生物信息学研究表明,这个超家族包含600多个成员,许多成员催化的反应富含新颖的化学转化。自那项开创性研究以来,RS超家族已大幅扩展,其成员参与的反应范围和生化途径的新细节也已出现。本综述将仅突出过去两到三年中一些最重要的发现,主要关注:参与复杂金属辅因子成熟的RS酶;缺乏典型CxxxCxxC基序的已表征RS酶;含有多个铁硫簇的RS酶;催化具有重要医学意义反应的RS酶;以及生成5'-脱氧腺苷自由基的能量学和机制。不幸的是,将省略一些关于RS酶的重要研究,希望读者查阅相关文献——特别是最近撰写的一些关于该主题的优秀综述文章——以更深入地了解这类酶。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/854abbedaa92/biolrep-02-52-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/467884d44375/biolrep-02-52-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/8562fa9c5aa6/biolrep-02-52-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/bb6731c270ae/biolrep-02-52-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/37d80002e952/biolrep-02-52-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/fdc2f80e736c/biolrep-02-52-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/48b4fa305cd7/biolrep-02-52-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/854abbedaa92/biolrep-02-52-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/467884d44375/biolrep-02-52-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/8562fa9c5aa6/biolrep-02-52-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/bb6731c270ae/biolrep-02-52-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/37d80002e952/biolrep-02-52-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/fdc2f80e736c/biolrep-02-52-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/48b4fa305cd7/biolrep-02-52-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b089/2996862/854abbedaa92/biolrep-02-52-g007.jpg

相似文献

1
Mechanistic and functional versatility of radical SAM enzymes.自由基S-腺苷甲硫氨酸酶的作用机制与功能多样性
F1000 Biol Rep. 2010 Jul 14;2:52. doi: 10.3410/B2-52.
2
Mechanism of Radical Initiation in the Radical S-Adenosyl-l-methionine Superfamily.自由基 S-腺苷甲硫氨酸超家族中自由基引发的机制。
Acc Chem Res. 2018 Nov 20;51(11):2611-2619. doi: 10.1021/acs.accounts.8b00356. Epub 2018 Oct 15.
3
RlmN and AtsB as models for the overproduction and characterization of radical SAM proteins.以RlmN和AtsB作为自由基S-腺苷甲硫氨酸蛋白过量表达及特性研究的模型。
Methods Enzymol. 2012;516:125-52. doi: 10.1016/B978-0-12-394291-3.00030-7.
4
Paradigm Shift for Radical S-Adenosyl-l-methionine Reactions: The Organometallic Intermediate Ω Is Central to Catalysis. radically S-adenosyl-l-methionine 反应的范式转变:有机金属中间体 Ω 是催化的核心。
J Am Chem Soc. 2018 Jul 18;140(28):8634-8638. doi: 10.1021/jacs.8b04061. Epub 2018 Jul 6.
5
Radical SAM enzymes: Nature's choice for radical reactions.自由基 S-腺苷甲硫氨酸酶:自由基反应的自然选择。
FEBS Lett. 2023 Jan;597(1):92-101. doi: 10.1002/1873-3468.14519. Epub 2022 Oct 27.
6
Structure and Catalytic Mechanism of Radical SAM Methylases.自由基S-腺苷甲硫氨酸甲基转移酶的结构与催化机制
Life (Basel). 2022 Oct 28;12(11):1732. doi: 10.3390/life12111732.
7
Auxiliary iron-sulfur cofactors in radical SAM enzymes.自由基S-腺苷甲硫氨酸酶中的辅助铁硫辅因子。
Biochim Biophys Acta. 2015 Jun;1853(6):1316-34. doi: 10.1016/j.bbamcr.2015.01.002. Epub 2015 Jan 15.
8
Journey on the Radical SAM Road as an Accidental Pilgrim.作为一名意外的朝圣者踏上激进S-腺苷甲硫氨酸之路。
ACS Bio Med Chem Au. 2022 Jun 15;2(3):187-195. doi: 10.1021/acsbiomedchemau.1c00059. Epub 2022 Feb 28.
9
Broken-Symmetry Density Functional Theory Analysis of the Ω Intermediate in Radical -Adenosyl-l-methionine Enzymes: Evidence for a Near-Attack Conformer over an Organometallic Species.自由基 - 腺苷 - L - 蛋氨酸酶中Ω中间体的破缺对称密度泛函理论分析:支持近攻击构象体优于有机金属物种的证据。
J Am Chem Soc. 2022 Mar 2;144(8):3381-3385. doi: 10.1021/jacs.2c00678. Epub 2022 Feb 16.
10
Radical SAM enzymes in methylation and methylthiolation.甲基化和甲基硫醚化中的激进 SAM 酶。
Metallomics. 2012 Nov;4(11):1149-54. doi: 10.1039/c2mt20136d. Epub 2012 Sep 19.

引用本文的文献

1
Protein-derived cofactors: chemical innovations expanding enzyme catalysis.蛋白质衍生的辅因子:拓展酶催化作用的化学创新
Chem Soc Rev. 2025 May 6;54(9):4502-4530. doi: 10.1039/d4cs00981a.
2
Molecular Mechanisms Provide a Landscape for Biomarker Selection for Schizophrenia and Schizoaffective Psychosis.分子机制为精神分裂症和分裂情感性精神病的生物标志物选择提供了一个全景。
Int J Mol Sci. 2023 Oct 18;24(20):15296. doi: 10.3390/ijms242015296.
3
Structure and Catalytic Mechanism of Radical SAM Methylases.自由基S-腺苷甲硫氨酸甲基转移酶的结构与催化机制

本文引用的文献

1
A consensus mechanism for Radical SAM-dependent dehydrogenation? BtrN contains two [4Fe-4S] clusters.自由基依赖的 SAM 去氢酶的共识机制?BtrN 包含两个 [4Fe-4S] 簇。
Biochemistry. 2010 May 11;49(18):3783-5. doi: 10.1021/bi9022126.
2
RlmN and Cfr are radical SAM enzymes involved in methylation of ribosomal RNA.RlmN 和 Cfr 是参与核糖体 RNA 甲基化的自由基 SAM 酶。
J Am Chem Soc. 2010 Mar 24;132(11):3953-64. doi: 10.1021/ja910850y.
3
The antiviral protein viperin is a radical SAM enzyme.抗病毒蛋白 viperin 是一种自由基 SAM 酶。
Life (Basel). 2022 Oct 28;12(11):1732. doi: 10.3390/life12111732.
4
In Vitro Demonstration of Human Lipoyl Synthase Catalytic Activity in the Presence of NFU1.在NFU1存在的情况下人硫辛酰胺合成酶催化活性的体外证明
ACS Bio Med Chem Au. 2022 Oct 19;2(5):456-468. doi: 10.1021/acsbiomedchemau.2c00020. Epub 2022 Jun 13.
5
Characterization of LipS1 and LipS2 from : Proteins Annotated as Biotin Synthases, which Together Catalyze Formation of the Lipoyl Cofactor.来自[具体来源未给出]的LipS1和LipS2的特性:被注释为生物素合酶的蛋白质,它们共同催化硫辛酰辅因子的形成。
ACS Bio Med Chem Au. 2022 Oct 19;2(5):509-520. doi: 10.1021/acsbiomedchemau.2c00018. Epub 2022 Jul 14.
6
Molecular Insight into Resistance to Nitrofuranyl Amides Gained through Metagenomics-like Analysis of Spontaneous Mutants.通过对自发突变体进行宏基因组学样分析获得的对硝基呋喃酰胺耐药性的分子洞察
Pharmaceuticals (Basel). 2022 Sep 12;15(9):1136. doi: 10.3390/ph15091136.
7
The histone code of the fungal genus uncovered by evolutionary and proteomic analyses.通过进化和蛋白质组学分析揭示的真菌属的组蛋白密码。
Microb Genom. 2022 Sep;8(9). doi: 10.1099/mgen.0.000856.
8
Making and breaking carbon-carbon bonds in class C radical SAM methyltransferases.C 类自由基 S-腺苷甲硫氨酸甲基转移酶中碳-碳键的形成与断裂。
J Inorg Biochem. 2022 Jan;226:111636. doi: 10.1016/j.jinorgbio.2021.111636. Epub 2021 Oct 22.
9
Biochemical Approaches to Probe the Role of the Auxiliary Iron-Sulfur Cluster of Lipoyl Synthase from Mycobacterium Tuberculosis.用生化方法研究结核分枝杆菌的酰基辅酶 A 合成酶辅助铁硫簇的作用。
Methods Mol Biol. 2021;2353:307-332. doi: 10.1007/978-1-0716-1605-5_16.
10
Aminofutalosine Deaminase in the Menaquinone Pathway of .类氨基蝶呤脱氨酶在menaquinone 途径中的作用。
Biochemistry. 2021 Jun 22;60(24):1933-1946. doi: 10.1021/acs.biochem.1c00215. Epub 2021 Jun 2.
FEBS Lett. 2010 Mar 19;584(6):1263-7. doi: 10.1016/j.febslet.2010.02.041. Epub 2010 Feb 20.
4
[FeFe]-hydrogenase cyanide ligands derived from S-adenosylmethionine-dependent cleavage of tyrosine.[铁铁]-氢化酶氰化物配体源于依赖S-腺苷甲硫氨酸的酪氨酸裂解。
Angew Chem Int Ed Engl. 2010 Feb 22;49(9):1687-90. doi: 10.1002/anie.200907047.
5
A role for the elongator complex in zygotic paternal genome demethylation.延伸复合物在合子父系基因组去甲基化中的作用。
Nature. 2010 Jan 28;463(7280):554-8. doi: 10.1038/nature08732. Epub 2010 Jan 6.
6
Structural characterization reveals that viperin is a radical S-adenosyl-L-methionine (SAM) enzyme.结构特征表明 viperin 是一种活性 S-腺苷-L-甲硫氨酸(SAM)酶。
Biochem Biophys Res Commun. 2010 Jan 15;391(3):1390-5. doi: 10.1016/j.bbrc.2009.12.070. Epub 2009 Dec 22.
7
Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria.深入了解结构、功能和进化的 radical-SAM 23S rRNA 甲基转移酶 Cfr,该酶赋予细菌对抗生素的耐药性。
Nucleic Acids Res. 2010 Mar;38(5):1652-63. doi: 10.1093/nar/gkp1142. Epub 2009 Dec 10.
8
Post-translational modification of ribosomal proteins: structural and functional characterization of RimO from Thermotoga maritima, a radical S-adenosylmethionine methylthiotransferase.核糖体蛋白的翻译后修饰:来自海洋栖热菌的 RimO 的结构和功能表征,一种激进的 S-腺苷甲硫氨酸甲基转移酶。
J Biol Chem. 2010 Feb 19;285(8):5792-801. doi: 10.1074/jbc.M109.065516. Epub 2009 Dec 9.
9
The antiviral protein, viperin, localizes to lipid droplets via its N-terminal amphipathic alpha-helix.抗病毒蛋白 viperin 通过其 N 端两亲性 α-螺旋定位于脂滴。
Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20452-7. doi: 10.1073/pnas.0911679106. Epub 2009 Nov 17.
10
Identification and characterization of a novel member of the radical AdoMet enzyme superfamily and implications for the biosynthesis of the Hmd hydrogenase active site cofactor.鉴定并阐明了活性腺苷甲硫氨酸酶超家族的一个新成员,及其对 Hmd 氢化酶活性位点辅因子生物合成的影响。
J Bacteriol. 2010 Jan;192(2):595-8. doi: 10.1128/JB.01125-09. Epub 2009 Nov 6.