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从晶体结构中挖掘与功能相关的蛋白质多态性的电子密度。

Mining electron density for functionally relevant protein polysterism in crystal structures.

机构信息

Department of Cellular and Molecular Pharmacology and California Institute of Quantitative Biosciences (QB3), University of California, San Francisco, San Francisco, CA 94158, USA.

出版信息

Cell Mol Life Sci. 2011 Jun;68(11):1829-41. doi: 10.1007/s00018-010-0611-4. Epub 2010 Dec 29.

Abstract

This review focuses on conceptual and methodological advances in our understanding and characterization of the conformational heterogeneity of proteins. Focusing on X-ray crystallography, we describe how polysterism, the interconversion of pre-existing conformational substates, has traditionally been analyzed by comparing independent crystal structures or multiple chains within a single crystal asymmetric unit. In contrast, recent studies have focused on mining electron density maps to reveal previously 'hidden' minor conformational substates. Functional tests of the importance of minor states suggest that evolutionary selection shapes the entire conformational landscape, including uniquely configured conformational substates, the relative distribution of these substates, and the speed at which the protein can interconvert between them. An increased focus on polysterism may shape the way protein structure and function is studied in the coming years.

摘要

本文综述了我们在理解和描述蛋白质构象异质性方面的概念和方法学进展。本文聚焦于 X 射线晶体学,描述了如何通过比较独立晶体结构或单个晶体不对称单元中的多个链,来分析多晶型现象,即预先存在的构象亚稳态之间的转换。相比之下,最近的研究侧重于挖掘电子密度图,以揭示以前“隐藏”的次要构象亚稳态。对次要状态重要性的功能测试表明,进化选择塑造了整个构象景观,包括独特配置的构象亚稳态、这些亚稳态的相对分布以及蛋白质在它们之间转换的速度。对多晶型现象的日益关注可能会改变未来几年研究蛋白质结构和功能的方式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/39df/11115160/25b7b6197bfd/18_2010_611_Fig1_HTML.jpg

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