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带多碱性结构域的蛋白质在阴离子膜上的侧向动力学:动态蒙特卡罗研究。

Lateral dynamics of proteins with polybasic domain on anionic membranes: a dynamic Monte-Carlo study.

机构信息

Centre for Systems Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom.

出版信息

Biophys J. 2011 Mar 2;100(5):1261-70. doi: 10.1016/j.bpj.2011.01.025.

Abstract

Positively charged polybasic domains are essential for recruiting multiple signaling proteins, such as Ras GTPases and Src kinase, to the negatively charged cellular membranes. Much less, however, is known about the influence of electrostatic interactions on the lateral dynamics of these proteins. We developed a dynamic Monte-Carlo automaton that faithfully simulates lateral diffusion of the adsorbed positively charged oligopeptides as well as the dynamics of mono- (phosphatidylserine) and polyvalent (PIP(2)) anionic lipids within the bilayer. In agreement with earlier results, our simulations reveal lipid demixing that leads to the formation of a lipid shell associated with the peptide. The computed association times and average numbers of bound lipids demonstrate that tetravalent PIP(2) interacts with the peptide much more strongly than monovalent lipid. On the spatially homogeneous membrane, the lipid shell affects the behavior of the peptide only by weakly reducing its lateral mobility. However, spatially heterogeneous distributions of monovalent lipids are found to produce peptide drift, the velocity of which is determined by the total charge of the peptide-lipid complex. We hypothesize that this predicted phenomenon may affect the spatial distribution of proteins with polybasic domains in the context of cell-signaling events that alter the local density of monovalent anionic lipids.

摘要

正电荷多碱性结构域对于招募多种信号蛋白(如 Ras GTPases 和Src 激酶)到带负电荷的细胞膜上是必不可少的。然而,关于静电相互作用对这些蛋白质的侧向动力学的影响,人们知之甚少。我们开发了一种动态的蒙特卡罗自动机,可以忠实地模拟吸附的带正电荷的寡肽的侧向扩散,以及单层内单(磷脂酰丝氨酸)和多价(PIP(2))阴离子脂质的动力学。与早期的结果一致,我们的模拟揭示了脂质的混合,导致与肽相关的脂质壳的形成。计算出的结合时间和结合的平均脂质数量表明,四价 PIP(2)与肽的相互作用比单价脂质强得多。在空间均匀的膜上,脂质壳仅通过弱降低肽的侧向流动性来影响肽的行为。然而,发现单价脂质的空间不均匀分布会导致肽漂移,其速度由肽-脂质复合物的总电荷决定。我们假设,这种预测的现象可能会影响具有多碱性结构域的蛋白质在改变单价阴离子脂质局部密度的细胞信号事件中的空间分布。

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