Ecology and Evolution, University of Chicago, Chicago, IL 60637, USA.
Plant J. 2011 Aug;67(3):554-66. doi: 10.1111/j.1365-313X.2011.04606.x. Epub 2011 Jun 16.
A major strength of Arabidopsis thaliana as a model lies in the availability of a large number of naturally occurring inbred lines. Recent studies of A. thaliana population structure, using thousands of accessions from stock center and natural collections, have revealed a robust pattern of isolation by distance at several spatial scales, such that genetically identical individuals are generally found close to each other. However, some individual accessions deviate from this pattern. While some of these may be the products of rare long-distance dispersal events, many deviations may be the result of mis-identification, in the sense that the data regarding location of origin data are incorrect. Here, we aim to identify such discrepancies. Of the 5965 accessions examined, we conclude that 286 deserve special attention as being potentially mis-identified. We describe these suspicious accessions and their possible origins, and advise caution with regard to their use in experiments in which accurate information on geographic origin is important. Finally, we discuss possibilities for maintaining the integrity of stock lines.
拟南芥作为模式生物的一个主要优势在于存在大量的自然近交系。最近对拟南芥种群结构的研究,使用了来自种子中心和自然收集的数千个品系,揭示了在几个空间尺度上存在强大的由距离引起的隔离模式,即遗传上相同的个体通常彼此靠近。然而,有些个体品系偏离了这种模式。虽然其中一些可能是罕见的长距离扩散事件的产物,但许多偏离可能是由于错误识别造成的,也就是说关于起源地的数据是不正确的。在这里,我们旨在识别这些差异。在所检查的 5965 个品系中,我们得出结论,有 286 个品系值得特别关注,因为它们可能被错误识别。我们描述了这些可疑的品系及其可能的起源,并建议在需要准确的地理起源信息的实验中谨慎使用这些品系。最后,我们讨论了保持品系完整性的可能性。