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较小的基因网络允许在快速变化的环境中更长时间的持续存在。

Smaller gene networks permit longer persistence in fast-changing environments.

机构信息

Integrative Biology, University of Texas at Austin, Austin, Texas, United States of America.

出版信息

PLoS One. 2011 Apr 25;6(4):e14747. doi: 10.1371/journal.pone.0014747.

Abstract

The environments in which organisms live and reproduce are rarely static, and as the environment changes, populations must evolve so that phenotypes match the challenges presented. The quantitative traits that map to environmental variables are underlain by hundreds or thousands of interacting genes whose allele frequencies and epistatic relationships must change appropriately for adaptation to occur. Extending an earlier model in which individuals possess an ecologically-critical trait encoded by gene networks of 16 to 256 genes and random or scale-free topology, I test the hypothesis that smaller, scale-free networks permit longer persistence times in a constantly-changing environment. Genetic architecture interacting with the rate of environmental change accounts for 78% of the variance in trait heritability and 66% of the variance in population persistence times. When the rate of environmental change is high, the relationship between network size and heritability is apparent, with smaller and scale-free networks conferring a distinct advantage for persistence time. However, when the rate of environmental change is very slow, the relationship between network size and heritability disappears and populations persist the duration of the simulations, without regard to genetic architecture. These results provide a link between genes and population dynamics that may be tested as the -omics and bioinformatics fields mature, and as we are able to determine the genetic basis of ecologically-relevant quantitative traits.

摘要

生物生活和繁殖的环境很少是静态的,随着环境的变化,种群必须进化,以使表型与所面临的挑战相匹配。与环境变量相关的数量性状是由数百个或数千个相互作用的基因所决定的,这些基因的等位基因频率和上位性关系必须适当改变,才能实现适应。在一个早期模型的基础上进行扩展,该模型认为个体拥有由 16 到 256 个基因的基因网络编码的具有生态关键性的特征,并且具有随机或无标度拓扑结构,我测试了这样一个假设,即较小的、无标度网络可以在不断变化的环境中允许更长的持续时间。遗传结构与环境变化率的相互作用解释了 78%的特征遗传力方差和 66%的种群持续时间方差。当环境变化率较高时,网络大小和遗传力之间的关系是明显的,较小的和无标度的网络为持续时间提供了明显的优势。然而,当环境变化率非常缓慢时,网络大小和遗传力之间的关系就消失了,种群会持续模拟的时间,而不考虑遗传结构。这些结果为基因和种群动态之间提供了联系,随着组学和生物信息学领域的成熟,以及我们能够确定与生态相关的数量性状的遗传基础,这种联系可能会得到验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2310/3081814/cfde4a0246e2/pone.0014747.g001.jpg

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