Department of Genetics, University of Cambridge, Downing Street, Cambridge CB1 3QA, UK.
BMC Genomics. 2011 Jun 7;12:296. doi: 10.1186/1471-2164-12-296.
The mosquito, Anopheles gambiae, is the primary vector of human malaria, a disease responsible for millions of deaths each year. To improve strategies for controlling transmission of the causative parasite, Plasmodium falciparum, we require a thorough understanding of the developmental mechanisms, physiological processes and evolutionary pressures affecting life-history traits in the mosquito. Identifying genes expressed in particular tissues or involved in specific biological processes is an essential part of this process.
In this study, we present transcription profiles for ~82% of annotated Anopheles genes in dissected adult male and female tissues. The sensitivity afforded by examining dissected tissues found gene activity in an additional 20% of the genome that is undetected when using whole-animal samples. The somatic and reproductive tissues we examined each displayed patterns of sexually dimorphic and tissue-specific expression. By comparing expression profiles with Drosophila melanogaster we also assessed which genes are well conserved within the Diptera versus those that are more recently evolved.
Our expression atlas and associated publicly available database, the MozAtlas (http://www.tissue-atlas.org), provides information on the relative strength and specificity of gene expression in several somatic and reproductive tissues, isolated from a single strain grown under uniform conditions. The data will serve as a reference for other mosquito researchers by providing a simple method for identifying where genes are expressed in the adult, however, in addition our resource will also provide insights into the evolutionary diversity associated with gene expression levels among species.
疟蚊(Anopheles gambiae)是人类疟疾的主要传播媒介,每年导致数百万人死亡。为了改进控制疟原虫(Plasmodium falciparum)传播的策略,我们需要深入了解影响蚊子生活史特征的发育机制、生理过程和进化压力。鉴定在特定组织中表达或参与特定生物过程的基因是这一过程的重要组成部分。
在这项研究中,我们展示了约 82%已注释的疟蚊基因在解剖成年雄性和雌性组织中的转录谱。通过检查解剖组织,我们发现了另外 20%的基因组中的基因活性,而使用整个动物样本则无法检测到这些活性。我们检查的体组织和生殖组织都显示出了性二态和组织特异性表达的模式。通过将表达谱与黑腹果蝇(Drosophila melanogaster)进行比较,我们还评估了哪些基因在双翅目(Diptera)中是保守的,哪些基因是最近进化而来的。
我们的表达图谱和相关的公共可用数据库 MozAtlas(http://www.tissue-atlas.org),提供了在单一菌株在均匀条件下生长的几个体组织和生殖组织中基因表达的相对强度和特异性的信息。该数据将为其他蚊子研究人员提供一个简单的方法来识别成年蚊子中基因的表达位置,作为参考,但除此之外,我们的资源还将提供有关物种间与基因表达水平相关的进化多样性的见解。