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本文引用的文献

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The role of proline accumulation in halophytes.脯氨酸积累在盐生植物中的作用。
Planta. 1974 Jan;120(3):279-89. doi: 10.1007/BF00390296.
2
Note: On the universality of proximal radial distribution functions of proteins.注:蛋白质近程径向分布函数的普适性。
J Chem Phys. 2011 Mar 14;134(10):106101. doi: 10.1063/1.3565035.
3
Protein stability in the presence of cosolutes.共溶质存在下的蛋白质稳定性。
Methods Enzymol. 2011;492:61-125. doi: 10.1016/B978-0-12-381268-1.00015-X.
4
Urea denatured state ensembles contain extensive secondary structure that is increased in hydrophobic proteins.尿素变性状态集合包含广泛的二级结构,在疏水蛋白中增加。
Protein Sci. 2010 May;19(5):929-43. doi: 10.1002/pro.370.
5
Hydrogen bonding progressively strengthens upon transfer of the protein urea-denatured state to water and protecting osmolytes.氢键在蛋白质从尿素变性状态转移到水中并被保护渗透物保护时逐渐增强。
Biochemistry. 2010 Feb 16;49(6):1310-8. doi: 10.1021/bi9015499.
6
Rational modulation of conformational fluctuations in adenylate kinase reveals a local unfolding mechanism for allostery and functional adaptation in proteins.理性调节腺苷酸激酶构象波动揭示变构和蛋白质功能适应的局部展开机制。
Proc Natl Acad Sci U S A. 2009 Oct 6;106(40):16984-9. doi: 10.1073/pnas.0906510106. Epub 2009 Sep 21.
7
Structural thermodynamics of protein preferential solvation: osmolyte solvation of proteins, aminoacids, and peptides.蛋白质优先溶剂化的结构热力学:渗透溶质对蛋白质、氨基酸和肽的溶剂化作用
Proteins. 2008 Dec;73(4):802-13. doi: 10.1002/prot.22103.
8
Assessing the solvent-dependent surface area of unfolded proteins using an ensemble model.使用整体模型评估未折叠蛋白质的溶剂依赖性表面积。
Proc Natl Acad Sci U S A. 2008 Mar 4;105(9):3321-6. doi: 10.1073/pnas.0712240105. Epub 2008 Feb 27.
9
Anatomy of energetic changes accompanying urea-induced protein denaturation.尿素诱导蛋白质变性过程中能量变化的剖析。
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10
Application of the transfer model to understand how naturally occurring osmolytes affect protein stability.应用转移模型来理解天然存在的渗透溶质如何影响蛋白质稳定性。
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渗透溶质对蛋白质稳定性和溶解度的影响:骨架与侧链之间的平衡作用。

Osmolyte effects on protein stability and solubility: a balancing act between backbone and side-chains.

机构信息

Department of Medicine, Cardiovascular Research, Baylor College of Medicine, Houston, TX, United States.

出版信息

Biophys Chem. 2011 Nov;159(1):90-9. doi: 10.1016/j.bpc.2011.05.012. Epub 2011 May 19.

DOI:10.1016/j.bpc.2011.05.012
PMID:21683504
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3166983/
Abstract

In adaptation biology the discovery of intracellular osmolyte molecules that in some cases reach molar levels, raises questions of how they influence protein thermodynamics. We've addressed such questions using the premise that from atomic coordinates, the transfer free energy of a native protein (ΔG(tr,N)) can be predicted by summing measured water-to-osmolyte transfer free energies of the protein's solvent exposed side chain and backbone component parts. ΔG(tr,D) is predicted using a self avoiding random coil model for the protein, and ΔG(tr,D)-ΔG(tr,N), predicts the m-value, a quantity that measures the osmolyte effect on the N⇌D transition. Using literature and newly measured m-values we show 1:1 correspondence between predicted and measured m-values covering a range of 12 kcal/mol/M in protein stability for 46 proteins and 9 different osmolytes. Osmolytes present a range of side chain and backbone effects on N and D solubility and protein stability key to their biological roles.

摘要

在适应生物学中,发现了一些达到摩尔水平的细胞内渗透物分子,这引发了关于它们如何影响蛋白质热力学的问题。我们使用这样的前提来解决这些问题,即从原子坐标可以通过将测量的蛋白质溶剂暴露的侧链和骨架组成部分的水到渗透物的转移自由能加和来预测天然蛋白质的转移自由能(ΔG(tr,N))。ΔG(tr,D) 使用蛋白质的自回避无规线团模型进行预测,并且 ΔG(tr,D)-ΔG(tr,N) 预测 m 值,该值衡量渗透物对 N ⇌ D 转变的影响。使用文献和新测量的 m 值,我们展示了在蛋白质稳定性范围内为 12 kcal/mol/M 的 46 种蛋白质和 9 种不同渗透物的预测和测量 m 值之间的 1:1 对应关系。渗透物对 N 和 D 的溶解度以及对蛋白质稳定性具有一系列侧链和骨架效应,这对它们的生物学作用至关重要。