Thorne Bryan C, Hayenga Heather N, Humphrey Jay D, Peirce Shayn M
Department of Biomedical Engineering, University of Virginia Charlottesville, VA, USA.
Front Physiol. 2011 May 9;2:20. doi: 10.3389/fphys.2011.00020. eCollection 2011.
Agent-based models (ABMs) represent a novel approach to study and simulate complex mechano chemo-biological responses at the cellular level. Such models have been used to simulate a variety of emergent responses in the vasculature, including angiogenesis and vasculogenesis. Although not used previously to study large vessel adaptations, we submit that ABMs will prove equally useful in such studies when combined with well-established continuum models to form multi-scale models of tissue-level phenomena. In order to couple agent-based and continuum models, however, there is a need to ensure that each model faithfully represents the best data available at the relevant scale and that there is consistency between models under baseline conditions. Toward this end, we describe the development and verification of an ABM of endothelial and smooth muscle cell responses to mechanical stimuli in a large artery. A refined rule-set is proposed based on a broad literature search, a new scoring system for assigning confidence in the rules, and a parameter sensitivity study. To illustrate the utility of these new methods for rule selection, as well as the consistency achieved with continuum-level models, we simulate the behavior of a mouse aorta during homeostasis and in response to both transient and sustained increases in pressure. The simulated responses depend on the altered cellular production of seven key mitogenic, synthetic, and proteolytic biomolecules, which in turn control the turnover of intramural cells and extracellular matrix. These events are responsible for gross changes in vessel wall morphology. This new ABM is shown to be appropriately stable under homeostatic conditions, insensitive to transient elevations in blood pressure, and responsive to increased intramural wall stress in hypertension.
基于主体的模型(ABM)是一种研究和模拟细胞水平复杂机械化学-生物学反应的新方法。此类模型已被用于模拟脉管系统中的多种涌现反应,包括血管生成和血管发生。尽管此前未用于研究大血管适应性,但我们认为,当ABM与成熟的连续介质模型相结合以形成组织水平现象的多尺度模型时,在这类研究中也将同样有用。然而,为了将基于主体的模型和连续介质模型耦合起来,需要确保每个模型都能忠实地呈现相关尺度下可获得的最佳数据,并且在基线条件下模型之间具有一致性。为此,我们描述了一种用于模拟大动脉中内皮细胞和平滑肌细胞对机械刺激反应的ABM的开发与验证。基于广泛的文献搜索、一种用于对规则赋予置信度的新评分系统以及参数敏感性研究,提出了一套完善的规则集。为了说明这些新的规则选择方法的效用,以及与连续介质水平模型实现的一致性,我们模拟了小鼠主动脉在稳态下以及对压力的瞬态和持续升高的反应。模拟反应取决于七种关键的促有丝分裂、合成和蛋白水解生物分子的细胞生成变化,这些生物分子进而控制壁内细胞和细胞外基质的更新。这些事件导致血管壁形态发生显著变化。这种新的ABM在稳态条件下显示出适当的稳定性,对血压的瞬态升高不敏感,并且对高血压时壁内压力升高有反应。