Microbe Division/Japan Collection of Microorganisms, RIKEN BioResource Center, Wako, Saitama 351-0198, Japan.
Laboratory of Experimental Animal Science, Nippon Veterinary and Life Science University, Musashino, Tokyo 180-8602, Japan.
Int J Syst Evol Microbiol. 2012 May;62(Pt 5):1145-1150. doi: 10.1099/ijs.0.032706-0. Epub 2011 Jul 1.
Strains of gram-negative anaerobic rods were isolated from chinchilla (Chinchilla lanigera) faeces, and three strains, ST161(T), ST33 and ST37(T), were investigated taxonomically. Based on phylogenetic analyses and specific phenotypic characteristics, the three strains were allocated to the genus Bacteroides. Phylogenetic analyses of their 16S rRNA gene sequences revealed that strain ST161(T) formed a distinct line of descent, with highest sequence similarity to strain ST33 (98.7 %) and Bacteroides oleiciplenus JCM 16102(T) (97.7 %). High levels of DNA-DNA relatedness (79-89 %) were found between strains ST161(T) and ST33, but low levels were found between strain ST161(T) and B. oleiciplenus JCM 16102(T) (33-37 %) and between strain ST33 and B. oleiciplenus JCM 16102(T) (33-37 %). These data clearly indicated that strains ST161(T) and ST33 represent a single novel species. 16S rRNA gene sequence analyses showed that strain ST37(T) also formed a distinct line of descent, with highest sequence similarity to Bacteroides acidifaciens JCM 10556(T) (96.5 %) and Bacteroides caccae JCM 9498(T) (95.6 %). Analysis of hsp60 gene sequences also supported these relationships. Based on phenotypic and phylogenetic characteristics, two novel species, Bacteroides stercorirosoris sp. nov. and Bacteroides faecichinchillae sp. nov., are thus proposed. The type strains of B. stercorirosoris and B. faecichinchillae are ST161(T) ( = JCM 17103(T) = CCUG 60872(T)) and ST37(T) ( = JCM 17102(T) = CCUG 60873(T)), respectively. The DNA G+C contents of strains ST161(T) and ST37(T) were 45.7 and 41.0 mol%, respectively.
从南美栗鼠(Chinchilla lanigera)粪便中分离到革兰氏阴性厌氧杆菌株,并对 3 株 ST161(T)、ST33 和 ST37(T)进行了分类学研究。基于系统发育分析和特定的表型特征,这 3 株菌被分配到拟杆菌属。16S rRNA 基因序列的系统发育分析表明,ST161(T)株形成了一个独特的进化枝,与 ST33 株(98.7%)和 Bacteroides oleiciplenus JCM 16102(T)(97.7%)的序列相似度最高。ST161(T)株与 ST33 株之间的 DNA-DNA 同源性水平较高(79-89%),而 ST161(T)株与 Bacteroides oleiciplenus JCM 16102(T)(33-37%)和 ST33 株与 Bacteroides oleiciplenus JCM 16102(T)(33-37%)之间的 DNA-DNA 同源性水平较低。这些数据清楚地表明,ST161(T)株和 ST33 株代表了一个新的单一物种。16S rRNA 基因序列分析表明,ST37(T)株也形成了一个独特的进化枝,与 Bacteroides acidifaciens JCM 10556(T)(96.5%)和 Bacteroides caccae JCM 9498(T)(95.6%)的序列相似度最高。hsp60 基因序列分析也支持这些关系。基于表型和系统发育特征,提出了两个新的物种,即拟杆菌粪臭亚种(Bacteroides stercorirosoris sp. nov.)和拟杆菌南美栗鼠亚种(Bacteroides faecichinchillae sp. nov.)。B. stercorirosoris 和 B. faecichinchillae 的模式菌株分别为 ST161(T)(=JCM 17103(T)=CCUG 60872(T))和 ST37(T)(=JCM 17102(T)=CCUG 60873(T))。ST161(T)株和 ST37(T)株的 DNA G+C 含量分别为 45.7mol%和 41.0mol%。