Consiglio Nazionale delle Ricerche-Istituto per l'Energetica e le Interfasi, Milan, Italy.
Biophys J. 2011 Jul 20;101(2):267-75. doi: 10.1016/j.bpj.2011.04.056.
The intermittent transition between slow growth and rapid shrinkage in polymeric assemblies is termed "dynamic instability", a feature observed in a variety of biochemically distinct assemblies including microtubules, actin, and their bacterial analogs. The existence of this labile phase of a polymer has many functional consequences in cytoskeletal dynamics, and its repeated appearance suggests that it is relatively easy to evolve. Here, we consider the minimal ingredients for the existence of dynamic instability by considering a single polymorphic filament that grows by binding to a substrate, undergoes a conformation change, and may unbind as a consequence of the residual strains induced by this change. We identify two parameters that control the phase space of possibilities for the filament: a structural mechanical parameter that characterizes the ratio of the bond strengths along the filament to those with the substrate (or equivalently the ratio of longitudinal to lateral interactions in an assembly), and a kinetic parameter that characterizes the ratio of timescales for growth and conformation change. In the deterministic limit, these parameters serve to demarcate a region of uninterrupted growth from that of collapse. However, in the presence of disorder in either the structural or the kinetic parameter the growth and collapse phases can coexist where the filament can grow slowly, shrink rapidly, and transition between these phases, thus exhibiting dynamic instability. We exhibit the window for the existence of dynamic instability in a phase diagram that allows us to quantify the evolvability of this labile phase.
聚合物组装体中缓慢生长和快速收缩之间的间歇性转变称为“动态不稳定性”,这是在多种生化上不同的组装体中观察到的特征,包括微管、肌动蛋白及其细菌类似物。聚合物这种不稳定相的存在对细胞骨架动力学有许多功能上的影响,而且它的反复出现表明它相对容易进化。在这里,我们通过考虑一个通过结合到基底上生长、经历构象变化并且可能由于这种变化引起的残余应变而解联的单态多晶丝,来考虑动态不稳定性存在的最小成分。我们确定了控制丝状物体相空间可能性的两个参数:一个结构力学参数,它描述了丝上键强度与基底上键强度的比值(或者在组装体中,纵向相互作用与横向相互作用的比值);一个动力学参数,它描述了生长和构象变化时间尺度的比值。在确定性极限下,这些参数用于将连续生长区域与崩溃区域区分开来。然而,在结构或动力学参数中的任何一种存在无序的情况下,生长和崩溃相可以共存,其中丝状物体可以缓慢生长、快速收缩并在这些相之间转换,从而表现出动态不稳定性。我们在一个允许我们量化这种不稳定相的可进化性的相图中展示了动态不稳定性存在的窗口。