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禽痘病毒基因组中与痘苗病毒D6至A1区域相对应区域的分析:痘病毒中非必需基因的定位及变异

Analysis of the fowlpox virus genome region corresponding to the vaccinia virus D6 to A1 region: location of, and variation in, non-essential genes in poxviruses.

作者信息

Binns M M, Britton B S, Mason C, Boursnell M E

机构信息

AFRC Institute for Animal Health, Houghton Laboratory, Huntingdon, Cambridgeshire, U.K.

出版信息

J Gen Virol. 1990 Dec;71 ( Pt 12):2873-81. doi: 10.1099/0022-1317-71-12-2873.

DOI:10.1099/0022-1317-71-12-2873
PMID:2177083
Abstract

The DNA sequence of the fowlpox virus genome corresponding to the vaccinia virus D6 to A1 region has been determined. Translation of this sequence reveals fowlpoxvirus gene homologues corresponding to the D6, D7, D9, D10, D11, D12, D13 and A1 genes of vaccinia virus. In contrast, no gene homologue for the non-essential vaccinia virus D8 gene was present in fowlpox virus. Instead, a gene transcribed from the opposite strand to the vaccinia virus D8 gene showing no homology to any previously sequenced poxvirus gene was present. The amino terminus of the fowlpox virus D9 homologue had undergone substantial changes, including frameshifts which would be predicted to inactivate the gene. Insertion of a gene cartridge composed of the vaccinia virus p7.5 promoter and the lacZ gene into the fowlpox virus D8, D9 and D10 genes in vitro, followed by recombination into fowlpox virus, was carried out. Stable insertion mutants with the correct genotype were obtained for D8 and D9 which, when tested in chickens did not appear to have been attenuated. No stable insertion mutants were obtained for D10, indicating that this gene probably encodes a function which is essential for virus replication. The D8 and D9 genes of fowlpox virus represent useful insertion sites for the construction of recombinant fowlpox virus vaccines.

摘要

已确定与痘苗病毒D6至A1区域相对应的禽痘病毒基因组的DNA序列。对该序列进行翻译后发现,禽痘病毒存在与痘苗病毒D6、D7、D9、D10、D11、D12、D13和A1基因相对应的基因同源物。相比之下,禽痘病毒中不存在痘苗病毒非必需基因D8的基因同源物。相反,存在一个从与痘苗病毒D8基因相反的链转录的基因,该基因与任何先前测序的痘病毒基因均无同源性。禽痘病毒D9同源物的氨基末端发生了重大变化,包括移码,预计这会使该基因失活。在体外将由痘苗病毒p7.5启动子和lacZ基因组成的基因盒插入禽痘病毒D8、D9和D10基因中,随后重组到禽痘病毒中。对于D8和D9,获得了具有正确基因型的稳定插入突变体,在鸡中进行测试时,这些突变体似乎并未减毒。未获得D10的稳定插入突变体,这表明该基因可能编码病毒复制所必需的功能。禽痘病毒的D8和D9基因是构建重组禽痘病毒疫苗的有用插入位点。

相似文献

1
Analysis of the fowlpox virus genome region corresponding to the vaccinia virus D6 to A1 region: location of, and variation in, non-essential genes in poxviruses.禽痘病毒基因组中与痘苗病毒D6至A1区域相对应区域的分析:痘病毒中非必需基因的定位及变异
J Gen Virol. 1990 Dec;71 ( Pt 12):2873-81. doi: 10.1099/0022-1317-71-12-2873.
2
Comparison of a conserved region in fowlpox virus and vaccinia virus genomes and the translocation of the fowlpox virus thymidine kinase gene.禽痘病毒和痘苗病毒基因组中保守区域的比较以及禽痘病毒胸苷激酶基因的易位
J Gen Virol. 1988 Jun;69 ( Pt 6):1275-83. doi: 10.1099/0022-1317-69-6-1275.
3
Nucleotide sequence analysis of a 10.5 kbp HindIII fragment of fowlpox virus: relatedness to the central portion of the vaccinia virus HindIII D region.禽痘病毒10.5kbp HindIII片段的核苷酸序列分析:与痘苗病毒HindIII D区中央部分的相关性
J Gen Virol. 1990 Jul;71 ( Pt 7):1517-24. doi: 10.1099/0022-1317-71-7-1517.
4
Similar genetic organization between a region of fowlpox virus DNA and the vaccinia virus HindIII J fragment despite divergent location of the thymidine kinase gene.尽管胸苷激酶基因位置不同,但禽痘病毒DNA区域与痘苗病毒HindIII J片段之间存在相似的基因组织。
Virology. 1987 Sep;160(1):203-9. doi: 10.1016/0042-6822(87)90061-4.
5
Sequence analysis of an 11.2 kilobase, near-terminal, BamHI fragment of fowlpox virus.禽痘病毒11.2千碱基近末端BamHI片段的序列分析
J Gen Virol. 1988 May;69 ( Pt 5):1025-40. doi: 10.1099/0022-1317-69-5-1025.
6
Construction of fowlpox virus vectors with intergenic insertions: expression of the beta-galactosidase gene and the measles virus fusion gene.构建带有基因间插入片段的禽痘病毒载体:β-半乳糖苷酶基因和麻疹病毒融合基因的表达
J Virol. 1990 Feb;64(2):527-33. doi: 10.1128/JVI.64.2.527-533.1990.
7
Insertional inactivation of a fowlpox virus homologue of the vaccinia virus F12L gene inhibits the release of enveloped virions.痘苗病毒F12L基因的禽痘病毒同源物的插入失活抑制了包膜病毒粒子的释放。
J Gen Virol. 1993 Jan;74 ( Pt 1):55-64. doi: 10.1099/0022-1317-74-1-55.
8
Identification and cloning of the fowlpox virus thymidine kinase gene using vaccinia virus.利用痘苗病毒鉴定和克隆禽痘病毒胸苷激酶基因
J Gen Virol. 1986 Aug;67 ( Pt 8):1591-600. doi: 10.1099/0022-1317-67-8-1591.
9
Deletion of fowlpox virus homologues of vaccinia virus genes between the 3 beta-hydroxysteroid dehydrogenase (A44L) and DNA ligase (A50R) genes.删除痘苗病毒基因中3β-羟基类固醇脱氢酶(A44L)和DNA连接酶(A50R)基因之间的禽痘病毒同源物。
J Gen Virol. 1994 Sep;75 ( Pt 9):2495-8. doi: 10.1099/0022-1317-75-9-2495.
10
Gene translocations in poxviruses: the fowlpox virus thymidine kinase gene is flanked by 15 bp direct repeats and occupies the locus which in vaccinia virus is occupied by the ribonucleotide reductase large subunit gene.痘病毒中的基因易位:禽痘病毒胸苷激酶基因两侧有15个碱基对的正向重复序列,且占据了痘苗病毒中由核糖核苷酸还原酶大亚基基因所占据的位点。
Virus Res. 1992 Jul;24(2):161-72. doi: 10.1016/0168-1702(92)90004-s.

引用本文的文献

1
Characterization of a vaccinia virus mutant with a deletion of the D10R gene encoding a putative negative regulator of gene expression.一种缺失编码假定基因表达负调控因子的D10R基因的痘苗病毒突变体的特性分析。
J Virol. 2006 Jan;80(2):553-61. doi: 10.1128/JVI.80.2.553-561.2006.
2
The genome of fowlpox virus.禽痘病毒的基因组。
J Virol. 2000 Apr;74(8):3815-31. doi: 10.1128/jvi.74.8.3815-3831.2000.
3
Down regulation of gene expression by the vaccinia virus D10 protein.痘苗病毒D10蛋白对基因表达的下调作用。
J Virol. 1999 Jan;73(1):791-6. doi: 10.1128/JVI.73.1.791-796.1999.
4
Nucleotide sequence of the 4.3 kbp BamHI-N fragment of fowlpox virus FP9.禽痘病毒FP9的4.3千碱基对BamHI-N片段的核苷酸序列
Virus Genes. 1998;17(1):5-9. doi: 10.1023/a:1008045914991.
5
A highly conserved sequence motif defining the family of MutT-related proteins from eubacteria, eukaryotes and viruses.一个高度保守的序列基序,定义了来自真细菌、真核生物和病毒的MutT相关蛋白家族。
Nucleic Acids Res. 1993 Oct 11;21(20):4847. doi: 10.1093/nar/21.20.4847.
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Identification of genes encoding zinc finger proteins, non-histone chromosomal HMG protein homologue, and a putative GTP phosphohydrolase in the genome of Chilo iridescent virus.在稻纵卷叶螟虹彩病毒基因组中鉴定编码锌指蛋白、非组蛋白染色体HMG蛋白同源物和一种假定的GTP磷酸水解酶的基因。
Nucleic Acids Res. 1994 Jan 25;22(2):158-66. doi: 10.1093/nar/22.2.158.