相似文献
1
Making whole genome multiple alignments usable for biologists.
Bioinformatics. 2011 Sep 1;27(17):2426-8. doi: 10.1093/bioinformatics/btr398. Epub 2011 Jul 19.
2
Manipulation of FASTQ data with Galaxy.
Bioinformatics. 2010 Jul 15;26(14):1783-5. doi: 10.1093/bioinformatics/btq281. Epub 2010 Jun 18.
3
The missing graphical user interface for genomics.
Genome Biol. 2010;11(8):128. doi: 10.1186/gb-2010-11-8-128. Epub 2010 Aug 25.
4
Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support.
Bioinformatics. 2006 Apr 1;22(7):885-6. doi: 10.1093/bioinformatics/btl028. Epub 2006 Feb 10.
5
Using galaxy to perform large-scale interactive data analyses.
Curr Protoc Bioinformatics. 2007 Sep;Chapter 10:Unit 10.5. doi: 10.1002/0471250953.bi1005s19.
6
MultiPipMaker: comparative alignment server for multiple DNA sequences.
Curr Protoc Bioinformatics. 2005 Apr;Chapter 10:Unit10.4. doi: 10.1002/0471250953.bi1004s9.
7
GenomeVISTA--an integrated software package for whole-genome alignment and visualization.
Bioinformatics. 2014 Sep 15;30(18):2654-5. doi: 10.1093/bioinformatics/btu355. Epub 2014 May 23.
8
MUTAGEN: multi-user tool for annotating genomes.
Bioinformatics. 2003 Dec 12;19(18):2480-1. doi: 10.1093/bioinformatics/btg336.
9
SBAL: a practical tool to generate and edit structure-based amino acid sequence alignments.
Bioinformatics. 2012 Apr 1;28(7):1026-7. doi: 10.1093/bioinformatics/bts035. Epub 2012 Feb 12.
10
GenomeCons: a web server for manipulating multiple genome sequence alignments and their consensus sequences.
Bioinformatics. 2015 Apr 15;31(8):1293-5. doi: 10.1093/bioinformatics/btu803. Epub 2014 Dec 4.
引用本文的文献
1
Genome Report: chromosome-scale genome assembly of the African spiny mouse (Acomys cahirinus).
G3 (Bethesda). 2023 Sep 30;13(10). doi: 10.1093/g3journal/jkad177.
2
GENOME REPORT: Chromosome-scale genome assembly of the African spiny mouse ( ).
bioRxiv. 2023 Apr 5:2023.04.03.535372. doi: 10.1101/2023.04.03.535372.
3
Developmental and evolutionary comparative analysis of a regulatory landscape in mouse and chicken.
Development. 2022 Jun 15;149(12). doi: 10.1242/dev.200594. Epub 2022 Jun 30.
4
Detection and identification of cis-regulatory elements using change-point and classification algorithms.
BMC Genomics. 2022 Jan 25;23(1):78. doi: 10.1186/s12864-021-08190-0.
5
Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring.
bioRxiv. 2021 Mar 25:2021.03.25.437046. doi: 10.1101/2021.03.25.437046.
6
GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering.
Gigascience. 2019 Dec 1;8(12). doi: 10.1093/gigascience/giz150.
7
Return to the Sea, Get Huge, Beat Cancer: An Analysis of Cetacean Genomes Including an Assembly for the Humpback Whale (Megaptera novaeangliae).
Mol Biol Evol. 2019 Aug 1;36(8):1746-1763. doi: 10.1093/molbev/msz099.
8
From De Novo to "De Nono": The Majority of Novel Protein-Coding Genes Identified with Phylostratigraphy Are Old Genes or Recent Duplicates.
Genome Biol Evol. 2018 Nov 1;10(11):2906-2918. doi: 10.1093/gbe/evy231.
9
The asymmetrically segregating lncRNA cherub is required for transforming stem cells into malignant cells.
Elife. 2018 Mar 27;7:e31347. doi: 10.7554/eLife.31347.
10
Comparative Genomics Reveals Accelerated Evolution in Conserved Pathways during the Diversification of Anole Lizards.
Genome Biol Evol. 2018 Feb 1;10(2):489-506. doi: 10.1093/gbe/evy013.
本文引用的文献
1
Using Galaxy to perform large-scale interactive data analyses.
Curr Protoc Bioinformatics. 2012 Jun;Chapter 10:10.5.1-10.5.47. doi: 10.1002/0471250953.bi1005s38.
2
Galaxy CloudMan: delivering cloud compute clusters.
BMC Bioinformatics. 2010 Dec 21;11 Suppl 12(Suppl 12):S4. doi: 10.1186/1471-2105-11-S12-S4.
3
The UCSC Genome Browser database: update 2011.
Nucleic Acids Res. 2011 Jan;39(Database issue):D876-82. doi: 10.1093/nar/gkq963. Epub 2010 Oct 18.
4
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.
Genome Biol. 2010;11(8):R86. doi: 10.1186/gb-2010-11-8-r86. Epub 2010 Aug 25.
5
Galaxy: a web-based genome analysis tool for experimentalists.
Curr Protoc Mol Biol. 2010 Jan;Chapter 19:Unit 19.10.1-21. doi: 10.1002/0471142727.mb1910s89.
6
Using galaxy to perform large-scale interactive data analyses.
Curr Protoc Bioinformatics. 2007 Sep;Chapter 10:Unit 10.5. doi: 10.1002/0471250953.bi1005s19.
7
28-way vertebrate alignment and conservation track in the UCSC Genome Browser.
Genome Res. 2007 Dec;17(12):1797-808. doi: 10.1101/gr.6761107. Epub 2007 Nov 5.
8
A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly.
Genome Res. 2007 Jun;17(6):960-4. doi: 10.1101/gr.5578007.
9
The UCSC Table Browser data retrieval tool.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D493-6. doi: 10.1093/nar/gkh103.
10
The human genome browser at UCSC.
Genome Res. 2002 Jun;12(6):996-1006. doi: 10.1101/gr.229102.
Zotero 插件