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一种无晶格偏差的基于网格的巴德分析算法。

A grid-based Bader analysis algorithm without lattice bias.

作者信息

Tang W, Sanville E, Henkelman G

机构信息

Department of Chemistry and Biochemistry, The University of Texas at Austin, Austin, TX 78712-0165, USA.

出版信息

J Phys Condens Matter. 2009 Feb 25;21(8):084204. doi: 10.1088/0953-8984/21/8/084204. Epub 2009 Jan 30.

Abstract

A computational method for partitioning a charge density grid into Bader volumes is presented which is efficient, robust, and scales linearly with the number of grid points. The partitioning algorithm follows the steepest ascent paths along the charge density gradient from grid point to grid point until a charge density maximum is reached. In this paper, we describe how accurate off-lattice ascent paths can be represented with respect to the grid points. This improvement maintains the efficient linear scaling of an earlier version of the algorithm, and eliminates a tendency for the Bader surfaces to be aligned along the grid directions. As the algorithm assigns grid points to charge density maxima, subsequent paths are terminated when they reach previously assigned grid points. It is this grid-based approach which gives the algorithm its efficiency, and allows for the analysis of the large grids generated from plane-wave-based density functional theory calculations.

摘要

提出了一种将电荷密度网格划分为巴德体积的计算方法,该方法高效、稳健,且与网格点数呈线性比例关系。划分算法沿着电荷密度梯度从网格点到网格点遵循最陡上升路径,直到达到电荷密度最大值。在本文中,我们描述了相对于网格点如何精确地表示非晶格上升路径。这种改进保持了该算法早期版本的有效线性比例关系,并消除了巴德表面沿网格方向排列的趋势。由于该算法将网格点分配给电荷密度最大值,后续路径在到达先前分配的网格点时终止。正是这种基于网格的方法赋予了该算法效率,并允许对基于平面波的密度泛函理论计算所生成的大网格进行分析。

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