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海洋栖 Idiomarina aquimaris 新种,从造礁珊瑚 Isopora palifera 中分离得到。

Idiomarina aquimaris sp. nov., isolated from the reef-building coral Isopora palifera.

机构信息

Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung Marine University, 142 Hai-Chuan Road, Nan-Tzu, Kaohsiung City 81157, Taiwan, Republic of China.

Department of Marine Biotechnology, National Kaohsiung Marine University, 142 Hai-Chuan Road, Nan-Tzu, Kaohsiung City 81157, Taiwan, Republic of China.

出版信息

Int J Syst Evol Microbiol. 2012 Jul;62(Pt 7):1536-1542. doi: 10.1099/ijs.0.035592-0. Epub 2011 Aug 19.

Abstract

A bacterial strain designated SW15(T) was isolated from a sample of the reef-building coral Isopora palifera, collected in southern Taiwan. The novel strain was characterized using a polyphasic taxonomic approach. Cells of strain SW15(T) were Gram-negative, aerobic, light yellow, rod-shaped and motile by means of a single polar flagellum. In phylogenetic analyses based on 16S rRNA gene sequences, strain SW15(T) appeared to belong to the genus Idiomarina in the class Gammaproteobacteria and to be most closely related to Idiomarina homiensis PO-M2(T) (97.6% sequence similarity). Strain SW15(T) exhibited optimal growth between 20 and 30 °C, with NaCl between 3% and 4% (w/v) and at a pH value between 7 and 8. Predominant cellular fatty acids were iso-C(15:0) (31.1%), iso-C(17:0) (15.4%), iso-C(17:1)ω9c (10.0%) and C(16:0) (8.8%). The major respiratory quinone was ubiquinone Q-8. The polar lipid profile consisted of a mixture of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, phosphatidylserine, an uncharacterized aminolipid and several uncharacterized phospholipids. The DNA G+C content was 51.1 mol%. The level of DNA-DNA relatedness between strain SW15(T) and Idiomarina homiensis PO-M2(T) was 42.6-56.5%. The results of physiological and biochemical tests allowed the clear phenotypic differentiation of the novel strain from established species of the genus Idiomarina. Based on the genotypic, phenotypic and chemotaxonomic data, strain SW15(T) represents a novel species in the genus Idiomarina, for which the name Idiomarina aquimaris sp. nov. is proposed, with SW15(T) (=LMG 25374(T)=BCRC 80083(T)) as the type strain.

摘要

一株被命名为 SW15(T) 的细菌菌株是从台湾南部采集的造礁珊瑚 Isopora palifera 的样本中分离得到的。该新菌株通过多相分类学方法进行了特征描述。SW15(T) 菌株的细胞呈革兰氏阴性、需氧、浅黄色、杆状,通过单个极生鞭毛运动。在基于 16S rRNA 基因序列的系统发育分析中,SW15(T) 菌株似乎属于γ变形菌纲的 Idiomarina 属,与 Idiomarina homiensis PO-M2(T)(97.6%序列相似性)最为密切相关。SW15(T) 菌株的最佳生长温度为 20-30°C,NaCl 浓度为 3%-4%(w/v),pH 值为 7-8。主要的细胞脂肪酸为 iso-C(15:0)(31.1%)、iso-C(17:0)(15.4%)、iso-C(17:1)ω9c(10.0%)和 C(16:0)(8.8%)。主要的呼吸醌是泛醌 Q-8。极性脂谱由磷脂酰乙醇胺、磷脂酰甘油、双磷脂酰甘油、磷脂酰丝氨酸、一种未鉴定的胺脂和几种未鉴定的磷脂组成。DNA G+C 含量为 51.1 mol%。SW15(T) 菌株与 Idiomarina homiensis PO-M2(T) 之间的 DNA-DNA 同源性水平为 42.6-56.5%。生理生化试验结果清楚地区分了新菌株与 Idiomarina 属已建立的种。基于基因型、表型和化学分类学数据,SW15(T) 菌株代表 Idiomarina 属的一个新种,建议将其命名为 Idiomarina aquimaris sp. nov.,SW15(T)(=LMG 25374(T)=BCRC 80083(T))为模式菌株。

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