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使用马尔可夫链蒙特卡罗(MCMC)进行生态模型数据同化的入门指南。

A primer for data assimilation with ecological models using Markov Chain Monte Carlo (MCMC).

机构信息

Department of Mathematics, Augsburg College, Minneapolis, MN 55454, USA.

出版信息

Oecologia. 2011 Nov;167(3):599-611. doi: 10.1007/s00442-011-2107-9. Epub 2011 Aug 27.

DOI:10.1007/s00442-011-2107-9
PMID:21874332
Abstract

Data assimilation, or the fusion of a mathematical model with ecological data, is rapidly expanding knowledge of ecological systems across multiple spatial and temporal scales. As the amount of ecological data available to a broader audience increases, quantitative proficiency with data assimilation tools and techniques will be an essential skill for ecological analysis in this data-rich era. We provide a data assimilation primer for the novice user by (1) reviewing data assimilation terminology and methodology, (2) showcasing a variety of data assimilation studies across the ecological, environmental, and atmospheric sciences with the aim of gaining an understanding of potential applications of data assimilation, and (3) applying data assimilation in specific ecological examples to determine the components of net ecosystem carbon uptake in a forest and also the population dynamics of the mayfly (Hexagenia limbata, Serville). The review and examples are then used to provide guiding principles to newly proficient data assimilation practitioners.

摘要

数据同化,或数学模型与生态数据的融合,正在迅速扩展对生态系统的多时空尺度的认识。随着更广泛受众可获得的生态数据量的增加,在这个数据丰富的时代,具备数据同化工具和技术的定量能力将成为生态分析的一项基本技能。我们为新手用户提供了一份数据同化入门指南,内容包括:(1) 回顾数据同化术语和方法;(2) 展示生态、环境和大气科学领域的各种数据同化研究,旨在了解数据同化的潜在应用;(3) 将数据同化应用于特定的生态实例,以确定森林的净生态系统碳吸收成分,以及蜉蝣(Hexagenia limbata,Serville)的种群动态。然后,我们将使用这些综述和示例为新的熟练数据同化从业者提供指导原则。

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本文引用的文献

1
Parameter identifiability, constraint, and equifinality in data assimilation with ecosystem models.生态系统模型数据同化中的参数可识别性、约束与等效性
Ecol Appl. 2009 Apr;19(3):571-4. doi: 10.1890/08-0561.1.
2
Why trees migrate so fast: confronting theory with dispersal biology and the paleorecord.树木为何迁移得如此之快:用扩散生物学和古记录检验理论
Am Nat. 1998 Aug;152(2):204-24. doi: 10.1086/286162.
3
Teaching statistics in biology: using inquiry-based learning to strengthen understanding of statistical analysis in biology laboratory courses.
基于野生型、粗糙型和黏液型变异生物膜蠕变响应的黏弹性特性的贝叶斯估计。
Biofilm. 2023 Jun 3;5:100133. doi: 10.1016/j.bioflm.2023.100133. eCollection 2023 Dec.
4
A unique stone skipping-like trajectory of asteroid Aletai.小行星阿莱泰独特的类似打水漂的轨迹。
Sci Adv. 2022 Jun 24;8(25):eabm8890. doi: 10.1126/sciadv.abm8890.
5
A data assimilation framework that uses the Kullback-Leibler divergence.一种使用 KL 散度的数据同化框架。
PLoS One. 2021 Aug 26;16(8):e0256584. doi: 10.1371/journal.pone.0256584. eCollection 2021.
6
A Primer for Microbiome Time-Series Analysis.微生物组时间序列分析入门
Front Genet. 2020 Apr 21;11:310. doi: 10.3389/fgene.2020.00310. eCollection 2020.
7
Influencing factors and health risk assessment of microcystins in the Yongjiang river (China) by Monte Carlo simulation.基于蒙特卡洛模拟的中国邕江微囊藻毒素影响因素及健康风险评估
PeerJ. 2018 Nov 16;6:e5955. doi: 10.7717/peerj.5955. eCollection 2018.
8
Mathematical Modeling and Analyses of Interspike-Intervals of Spontaneous Activity in Afferent Neurons of the Zebrafish Lateral Line.鱼类侧线感觉神经元自发放电峰间隔的数学建模与分析。
Sci Rep. 2018 Oct 5;8(1):14851. doi: 10.1038/s41598-018-33064-z.
9
Climate controls over ecosystem metabolism: insights from a fifteen-year inductive artificial neural network synthesis for a subalpine forest.气候对生态系统新陈代谢的控制:来自对亚高山森林十五年归纳人工神经网络综合分析的见解。
Oecologia. 2017 May;184(1):25-41. doi: 10.1007/s00442-017-3853-0. Epub 2017 Mar 25.
10
Coordinated approaches for studying long-term ecosystem responses to global change.研究长期生态系统对全球变化响应的协调方法。
Oecologia. 2015 Apr;177(4):921-4. doi: 10.1007/s00442-015-3237-2. Epub 2015 Feb 13.
生物学中的统计学教学:运用基于探究的学习强化生物学实验课程中对统计分析的理解。
CBE Life Sci Educ. 2008 Fall;7(3):317-26. doi: 10.1187/cbe.07-07-0046.
4
Machine learning methods without tears: a primer for ecologists.无需复杂操作的机器学习方法:生态学家入门指南
Q Rev Biol. 2008 Jun;83(2):171-93. doi: 10.1086/587826.
5
Net carbon dioxide losses of northern ecosystems in response to autumn warming.北方生态系统对秋季变暖的净二氧化碳损失
Nature. 2008 Jan 3;451(7174):49-52. doi: 10.1038/nature06444.
6
Size variation and the distribution of hemimetabolous aquatic insects: two thermal equilibrium hypotheses.体型变化与半变态水生昆虫的分布:两种热平衡假说。
Science. 1978 Apr 28;200(4340):444-6. doi: 10.1126/science.200.4340.444.
7
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8
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Trends Ecol Evol. 2004 Feb;19(2):101-8. doi: 10.1016/j.tree.2003.10.013.
9
Climate-driven increases in global terrestrial net primary production from 1982 to 1999.1982年至1999年气候驱动下全球陆地净初级生产力的增加。
Science. 2003 Jun 6;300(5625):1560-3. doi: 10.1126/science.1082750.
10
Recent patterns and mechanisms of carbon exchange by terrestrial ecosystems.陆地生态系统碳交换的近期模式与机制
Nature. 2001 Nov 8;414(6860):169-72. doi: 10.1038/35102500.