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BrabA.11339.a:反常衍射和配体结合助力阐明来自布鲁氏菌的一种“假定的类β-内酰胺酶蛋白”的功能。

BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a 'putative β-lactamase-like protein' from Brucella melitensis.

作者信息

Abendroth Jan, Sankaran Banumathi, Edwards Thomas E, Gardberg Anna S, Dieterich Shellie, Bhandari Janhavi, Napuli Alberto J, Van Voorhis Wesley C, Staker Bart L, Myler Peter J, Stewart Lance J

机构信息

Seattle Structural Genomics Center for Infectious Disease (SSGCID), USA.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Sep 1;67(Pt 9):1106-12. doi: 10.1107/S1744309111010220. Epub 2011 Aug 16.

Abstract

The crystal structure of a β-lactamase-like protein from Brucella melitensis was initially solved by SAD phasing from an in-house data set collected on a crystal soaked with iodide. A high-resolution data set was collected at a synchroton at the Se edge wavelength, which also provided an independent source of phasing using a small anomalous signal from metal ions in the active site. Comparisons of anomalous peak heights at various wavelengths allowed the identification of the active-site metal ions as manganese. In the native data set a partially occupied GMP could be identified. When co-crystallized with AMPPNP or GMPPNP, clear density for the hydrolyzed analogs was observed, providing hints to the function of the protein.

摘要

来自布鲁氏菌的一种β-内酰胺酶样蛋白的晶体结构最初是通过单波长反常散射(SAD)法解析的,该方法基于用碘化物浸泡的晶体所收集的内部数据集。在同步加速器上于硒(Se)边缘波长处收集了高分辨率数据集,该数据集还利用活性位点中金属离子的小反常信号提供了一个独立的相位来源。通过比较不同波长下的反常峰高,确定活性位点的金属离子为锰。在天然数据集中,可以识别出一个部分占据的鸟苷-5'-单磷酸(GMP)。当与腺苷-5'-三磷酸(AMPPNP)或鸟苷-5'-三磷酸(GMPPNP)共结晶时,观察到水解类似物的清晰电子密度,这为该蛋白的功能提供了线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47ed/3169410/18c720c6c160/f-67-01106-fig1.jpg

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