乳杆菌 malefermentans KCTC 3548 基因组草图。
Draft genome sequence of Lactobacillus malefermentans KCTC 3548.
机构信息
Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology, 111 Gwahangno, Yuseong-gu, Daejeon 305-806, Republic of Korea.
出版信息
J Bacteriol. 2011 Oct;193(19):5537. doi: 10.1128/JB.05710-11.
Abstract
We announce the draft genome sequence of the type strain Lactobacillus malefermentans KCTC 3548 (2,003,922 bp, with a G+C content of 41.1%), which is one of the most prevalent lactic acid bacteria present during the manufacturing process of beer; the genome consists of 172 large contigs (>100 bp in size). All of the contigs were assembled by using Newbler Assembler 2.3 (454 Life Science).
摘要
我们宣布模式菌株发酵乳杆菌 KCTC 3548 的基因组草案序列（2003922bp，GC 含量为 41.1%），它是啤酒生产过程中最常见的乳酸菌之一；基因组由 172 个大型 contigs（大小>100bp）组成。所有 contigs 均使用 Newbler Assembler 2.3（454 Life Science）组装。
相似文献
1
Draft genome sequence of Lactobacillus malefermentans KCTC 3548.乳杆菌 malefermentans KCTC 3548 基因组草图。
J Bacteriol. 2011 Oct;193(19):5537. doi: 10.1128/JB.05710-11.
2
Draft genome sequence of Lactobacillus mali KCTC 3596.Lactobacillus mali KCTC 3596 基因组草图
J Bacteriol. 2011 Sep;193(18):5037. doi: 10.1128/JB.05686-11. Epub 2011 Jul 8.
3
Draft genome sequence of Lactobacillus zeae KCTC 3804.解淀粉乳杆菌 KCTC 3804 基因组草图
J Bacteriol. 2011 Sep;193(18):5023. doi: 10.1128/JB.05602-11.
4
Genome sequence of Lactobacillus suebicus KCTC 3549.嗜酸乳杆菌 KCTC 3549 的基因组序列。
J Bacteriol. 2011 Oct;193(19):5532-3. doi: 10.1128/JB.05814-11.
5
Genome sequence of Leuconostoc carnosum KCTC 3525.《肠膜明串珠菌 KCTC 3525 的基因组序列》
J Bacteriol. 2011 Nov;193(21):6100-1. doi: 10.1128/JB.06028-11.
6
Genome sequence of Leuconostoc pseudomesenteroides KCTC 3652.肠膜明串珠菌 KCTC 3652 基因组序列。
J Bacteriol. 2011 Aug;193(16):4299. doi: 10.1128/JB.05433-11. Epub 2011 Jun 24.
7
Genome sequence of Lactobacillus fructivorans KCTC 3543.植物乳杆菌 KCTC 3543 的基因组序列。
J Bacteriol. 2012 Apr;194(8):2111-2. doi: 10.1128/JB.00075-12.
8
Genome sequence of Lactobacillus animalis KCTC 3501.动物乳杆菌 KCTC 3501 的基因组序列。
J Bacteriol. 2011 Mar;193(5):1280-1. doi: 10.1128/JB.01505-10. Epub 2010 Dec 23.
9
Genome sequence of Lactobacillus farciminis KCTC 3681.法氏乳杆菌 KCTC 3681 的基因组序列。
J Bacteriol. 2011 Apr;193(7):1790-1. doi: 10.1128/JB.00003-11. Epub 2011 Jan 21.
10
Genome sequence of Lactobacillus versmoldensis KCTC 3814.弗氏乳杆菌 KCTC 3814 的基因组序列。
J Bacteriol. 2011 Oct;193(19):5589-90. doi: 10.1128/JB.05708-11.
引用本文的文献
1
Next-generation sequencing approaches for improvement of lactic acid bacteria-fermented plant-based beverages.用于改进乳酸菌发酵植物基饮料的新一代测序方法。
AIMS Microbiol. 2017 Jan 17;3(1):8-24. doi: 10.3934/microbiol.2017.1.8. eCollection 2017.
2
Unique substrate specificity of purine nucleoside phosphorylases from Thermus thermophilus.嗜热栖热菌嘌呤核苷磷酸化酶独特的底物特异性。
Extremophiles. 2013 May;17(3):505-14. doi: 10.1007/s00792-013-0535-7. Epub 2013 Apr 2.
本文引用的文献
1
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.《基因组在线数据库（GOLD）》2009 年报告：基因组和宏基因组项目及其相关元数据的现状。
Nucleic Acids Res. 2010 Jan;38(Database issue):D346-54. doi: 10.1093/nar/gkp848. Epub 2009 Nov 13.
2
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
3
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
4
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
5
Effect of consumption of red wine, spirits, and beer on serum homocysteine.
Lancet. 2000 Apr 29;355(9214):1522. doi: 10.1016/S0140-6736(00)02172-3.
6
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE：用于改进基因组序列中转运RNA基因检测的程序。
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
7
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.流感嗜血杆菌Rd的全基因组随机测序与组装
Science. 1995 Jul 28;269(5223):496-512. doi: 10.1126/science.7542800.
8
A rapid alkaline extraction procedure for screening recombinant plasmid DNA.一种用于筛选重组质粒DNA的快速碱性提取方法。
Nucleic Acids Res. 1979 Nov 24;7(6):1513-23. doi: 10.1093/nar/7.6.1513.
Zotero 插件