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本文引用的文献

1
Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida.假单胞菌属中特定小生境适应的比较基因组学和功能分析。
FEMS Microbiol Rev. 2011 Mar;35(2):299-323. doi: 10.1111/j.1574-6976.2010.00249.x.
2
Biotransformation of nicotine by microorganism: the case of Pseudomonas spp.微生物对尼古丁的生物转化：以假单胞菌为例。
Appl Microbiol Biotechnol. 2010 Mar;86(1):11-7. doi: 10.1007/s00253-009-2427-4. Epub 2010 Jan 21.
3
Biodegradation of nicotine by a newly isolated Agrobacterium sp. strain S33.一株新分离的农杆菌 S33 菌株对尼古丁的生物降解。
J Appl Microbiol. 2009 Sep;107(3):838-47. doi: 10.1111/j.1365-2672.2009.04259.x. Epub 2009 Mar 29.
4
IslandViewer: an integrated interface for computational identification and visualization of genomic islands.IslandViewer：用于基因组岛的计算识别与可视化的集成界面。
Bioinformatics. 2009 Mar 1;25(5):664-5. doi: 10.1093/bioinformatics/btp030. Epub 2009 Jan 16.
5
Novel nicotine oxidoreductase-encoding gene involved in nicotine degradation by Pseudomonas putida strain S16.恶臭假单胞菌S16菌株中参与尼古丁降解的新型尼古丁氧化还原酶编码基因。
Appl Environ Microbiol. 2009 Feb;75(3):772-8. doi: 10.1128/AEM.02300-08. Epub 2008 Dec 5.
6
Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology.恶臭假单胞菌KT2440代谢网络的基因组规模重建与分析有助于生物技术应用。
PLoS Comput Biol. 2008 Oct;4(10):e1000210. doi: 10.1371/journal.pcbi.1000210. Epub 2008 Oct 31.
7
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
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8
A novel gene, encoding 6-hydroxy-3-succinoylpyridine hydroxylase, involved in nicotine degradation by Pseudomonas putida strain S16.一个编码6-羟基-3-琥珀酰吡啶羟化酶的新基因，参与恶臭假单胞菌S16菌株对尼古丁的降解。
Appl Environ Microbiol. 2008 Mar;74(5):1567-74. doi: 10.1128/AEM.02529-07. Epub 2008 Jan 18.
9
Characterization of environmentally friendly nicotine degradation by Pseudomonas putida biotype A strain S16.恶臭假单胞菌生物型A菌株S16对尼古丁的环境友好型降解特性
Microbiology (Reading). 2007 May;153(Pt 5):1556-1565. doi: 10.1099/mic.0.2006/005223-0.
10
Biodegradation and detoxification of nicotine in tobacco solid waste by a Pseudomonas sp.一株假单胞菌对烟草固体废物中尼古丁的生物降解与解毒作用
Biotechnol Lett. 2004 Oct;26(19):1493-6. doi: 10.1023/B:BILE.0000044450.16235.65.

尼古丁降解假单胞菌 S16 全基因组序列。

Complete genome sequence of the nicotine-degrading Pseudomonas putida strain S16.

机构信息

State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China.

出版信息

J Bacteriol. 2011 Oct;193(19):5541-2. doi: 10.1128/JB.05663-11.

DOI:10.1128/JB.05663-11
PMID:21914868
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3187465/
Abstract

Pseudomonas putida S16 is an efficient degrader of nicotine. The complete genome of strain S16 (5,984,790 bp in length) includes genes related to catabolism of aromatic and heterocyclic compounds. The genes of enzymes in the core genome and a genomic island encode the proteins responsible for nicotine catabolism.

摘要

恶臭假单胞菌 S16 是尼古丁的高效降解菌。S16 菌株的全基因组（5984790bp）包含与芳香族和杂环化合物代谢有关的基因。核心基因组和基因组岛上的酶基因编码负责尼古丁代谢的蛋白质。