Suppr超能文献

UCSC 基因组浏览器数据库:扩展和更新 2011 年版。

The UCSC Genome Browser database: extensions and updates 2011.

机构信息

Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.

出版信息

Nucleic Acids Res. 2012 Jan;40(Database issue):D918-23. doi: 10.1093/nar/gkr1055. Epub 2011 Nov 15.

Abstract

The University of California Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a wide variety of organisms. The Browser is an integrated tool set for visualizing, comparing, analyzing and sharing both publicly available and user-generated genomic data sets. In the past year, the local database has been updated with four new species assemblies, and we anticipate another four will be released by the end of 2011. Further, a large number of annotation tracks have been either added, updated by contributors, or remapped to the latest human reference genome. Among these are new phenotype and disease annotations, UCSC genes, and a major dbSNP update, which required new visualization methods. Growing beyond the local database, this year we have introduced 'track data hubs', which allow the Genome Browser to provide access to remotely located sets of annotations. This feature is designed to significantly extend the number and variety of annotation tracks that are publicly available for visualization and analysis from within our site. We have also introduced several usability features including track search and a context-sensitive menu of options available with a right-click anywhere on the Browser's image.

摘要

加州大学圣克鲁兹分校基因组浏览器(http://genome.ucsc.edu)提供了在线公共访问,可访问不断增长的基因组序列和注释数据库,涵盖了多种生物体。该浏览器是一个集成工具集,用于可视化、比较、分析和共享公共可用和用户生成的基因组数据集。在过去的一年中,本地数据库已更新了四个新物种的组装,我们预计到 2011 年底还将发布另外四个。此外,大量的注释轨道已经添加、由贡献者更新,或重新映射到最新的人类参考基因组。其中包括新的表型和疾病注释、UCSC 基因以及重大的 dbSNP 更新,这需要新的可视化方法。除了本地数据库,今年我们还引入了“轨道数据中心”,允许基因组浏览器提供对远程位置的注释集的访问。该功能旨在从我们的网站内显著扩展可用于可视化和分析的公共可用注释轨道的数量和种类。我们还引入了一些可用性功能,包括轨道搜索和在浏览器图像上的任何位置右键单击时可用的上下文敏感选项菜单。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/696d/3245018/3faa7ae4b4a5/gkr1055f1.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验