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本文引用的文献

1
Characterization of the biosynthesis gene cluster for the pyrrole polyether antibiotic calcimycin (A23187) in Streptomyces chartreusis NRRL 3882.链霉菌 NRRL 3882 中吡咯并聚醚类抗生素钙敏素(A23187)生物合成基因簇的特征。
Antimicrob Agents Chemother. 2011 Mar;55(3):974-82. doi: 10.1128/AAC.01130-10. Epub 2010 Dec 20.
2
Characterization of the tunicamycin gene cluster unveiling unique steps involved in its biosynthesis.解析并阐明衣霉素生物合成途径中的独特步骤——解析衣霉素基因簇。
Protein Cell. 2010 Dec;1(12):1093-105. doi: 10.1007/s13238-010-0127-6. Epub 2010 Dec 9.
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Scaffolding pre-assembled contigs using SSPACE.使用 SSPACE 搭建预组装 contigs 的支架。
Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
4
Identification of the gene cluster for the dithiolopyrrolone antibiotic holomycin in Streptomyces clavuligerus.鉴定棒链霉菌中金霉素类抗生素霍洛霉素的二硫吡咯烷酮基因簇。
Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19731-5. doi: 10.1073/pnas.1014140107. Epub 2010 Nov 1.
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Prodigal: prokaryotic gene recognition and translation initiation site identification.普罗迪格:原核基因识别和翻译起始位点鉴定。
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
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Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒:使用德布鲁因图进行从头短读长拼接的算法》
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Biosynthesis of the antitumor agent chartreusin involves the oxidative rearrangement of an anthracyclic polyketide.抗肿瘤药物黄绿青霉素的生物合成涉及蒽环聚酮类化合物的氧化重排。
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三种产衣霉素的链霉菌菌株,即桔青霉 NRRL 12338、桔青霉 NRRL 3882 和解淀粉嗜热链霉菌 ATCC 31396 的基因组序列。

Genome sequences of three tunicamycin-producing Streptomyces Strains, S. chartreusis NRRL 12338, S. chartreusis NRRL 3882, and S. lysosuperificus ATCC 31396.

机构信息

Department of Microbiology and Institute for Genomic Biology at University of Illinois, Urbana-Champaign, Ilinois, USA.

出版信息

J Bacteriol. 2011 Dec;193(24):7021-2. doi: 10.1128/JB.06262-11.

DOI:10.1128/JB.06262-11
PMID:22123769
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3232853/
Abstract

We announce the sequencing of Streptomyces chartreusis NRRL 12338 and NRRL 3882 and Streptomyces lysosuperificus ATCC 31396. These are producers of tunicamycins, chartreusins, cephalosporins, holomycins, and calcimycin. The announced genomes, together with the published Streptomyces clavuligerus genome, will facilitate data mining of these secondary metabolites.

摘要

我们宣布对绛红小单孢菌 NRRL 12338 和 NRRL 3882 以及解淀粉小单孢菌 ATCC 31396 进行测序。这些菌株是游动放线菌素、沙雷菌素、头孢菌素、霍洛霉素和钙敏素的产生菌。公布的基因组与已发表的链霉菌属克拉维亚种基因组一起,将有助于对这些次级代谢产物进行数据挖掘。