科氏芽孢杆菌 CIP 52.97 株的全基因组序列，该菌分离自肯尼亚的一匹马。
Complete genome sequence of Corynebacterium pseudotuberculosis strain CIP 52.97, isolated from a horse in Kenya.
机构信息
Instituto de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil.
出版信息
J Bacteriol. 2011 Dec;193(24):7025-6. doi: 10.1128/JB.06293-11.
Abstract
In this work, we report the whole-genome sequence of Corynebacterium pseudotuberculosis bv. equi strain CIP 52.97 (Collection Institut Pasteur), isolated in 1952 from a case of ulcerative lymphangitis in a Kenyan horse, which has evidently caused significant losses to agribusiness. Therefore, obtaining this genome will allow the detection of important targets for postgenomic studies, with the aim of minimizing problems caused by this microorganism.
摘要
本工作报道了 1952 年从肯尼亚一匹患有溃疡性淋巴管炎的马中分离到的牛分枝杆菌亚种马型菌株 CIP 52.97（巴斯德研究院收藏）的全基因组序列，该菌显然给农业企业造成了重大损失。因此，获得该基因组将允许检测后基因组研究的重要靶标，旨在最大限度地减少该微生物引起的问题。
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本文引用的文献
1
Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study.
J Microbiol Methods. 2011 Aug;86(2):218-23. doi: 10.1016/j.mimet.2011.05.008. Epub 2011 May 18.
2
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
3
Corynebacterium pseudotuberculosis: microbiology, biochemical properties, pathogenesis and molecular studies of virulence.
Vet Res. 2006 Mar-Apr;37(2):201-18. doi: 10.1051/vetres:2005056.
4
InterProScan--an integration platform for the signature-recognition methods in InterPro.
Bioinformatics. 2001 Sep;17(9):847-8. doi: 10.1093/bioinformatics/17.9.847.
5
Artemis: sequence visualization and annotation.
Bioinformatics. 2000 Oct;16(10):944-5. doi: 10.1093/bioinformatics/16.10.944.
6
Risk factors associated with Corynebacterium pseudotuberculosis infection in California horses.
Prev Vet Med. 1998 Jun 30;35(4):229-39. doi: 10.1016/s0167-5877(98)00071-3.
7
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
8
Corynebacterium pseudotuberculosis infection in horses: 538 cases (1982-1993).
J Am Vet Med Assoc. 1996 Aug 15;209(4):804-9.
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