• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

调控重复基因座:果蝇松散配对富含功能重叠的增强子。

Regulation of a duplicated locus: Drosophila sloppy paired is replete with functionally overlapping enhancers.

机构信息

Dept. of Biochemistry and Molecular Biology, Kimmel Cancer Center, Thomas Jefferson University, Philadelphia, PA 19107, USA.

出版信息

Dev Biol. 2012 Feb 15;362(2):309-19. doi: 10.1016/j.ydbio.2011.12.001. Epub 2011 Dec 9.

DOI:10.1016/j.ydbio.2011.12.001
PMID:22178246
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3265641/
Abstract

In order to investigate regulation and redundancy within the sloppy paired (slp) locus, we analyzed 30 kilobases of DNA encompassing the tandem, coordinately regulated slp1 and slp2 transcription units. We found a remarkable array of stripe enhancers with overlapping activities surrounding the slp1 transcription unit, and, unexpectedly, glial cell enhancers surrounding slp2. The slp stripe regulatory region generates 7 stripes at blastoderm, and later 14 stripes that persist throughout embryogenesis. Phylogenetic analysis among drosophilids suggests that the multiplicity of stripe enhancers did not evolve through recent duplication. Most of the direct integration among cis-regulatory modules appears to be simply additive, with one notable exception. Despite the apparent redundancy among stripe enhancers, transgenic rescue suggests that most are required for full function, to maintain wingless expression and parasegment boundaries throughout embryogenesis. Transgenic rescue also reveals indirect positive autoregulation by the 7 early stripes, without which alternate stripes within the 14-stripe pattern are lost, leading to embryos with a pair-rule phenotype.

摘要

为了研究 sloopy paired(slp)基因座中的调控和冗余性,我们分析了包含串联、协调调控的 slp1 和 slp2 转录单元的 30 千碱基 DNA。我们发现了一个显著的条纹增强子阵列,其围绕着 slp1 转录单元具有重叠的活性,并且出人意料的是,还有围绕着 slp2 的神经胶质细胞增强子。slp 条纹调控区在原肠胚期产生 7 条条纹,然后在胚胎发生过程中持续产生 14 条条纹。果蝇属间的系统发育分析表明,条纹增强子的多样性不是通过最近的复制而进化的。大多数顺式调控模块之间的直接整合似乎只是简单的累加,只有一个显著的例外。尽管条纹增强子之间存在明显的冗余性,但转基因拯救表明,大多数增强子对于维持 wingless 表达和副节边界的完整功能是必需的,在整个胚胎发生过程中。转基因拯救还揭示了 7 个早期条纹的间接正自调节作用,如果没有这种作用,14 个条纹模式中的其他条纹就会丢失,导致具有成对规则表型的胚胎。

相似文献

1
Regulation of a duplicated locus: Drosophila sloppy paired is replete with functionally overlapping enhancers.调控重复基因座:果蝇松散配对富含功能重叠的增强子。
Dev Biol. 2012 Feb 15;362(2):309-19. doi: 10.1016/j.ydbio.2011.12.001. Epub 2011 Dec 9.
2
Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients.对一个偶数跳读拯救转基因的分析揭示了复合和离散的神经元及早期囊胚层增强子,以及间隙基因阻遏物梯度对多条纹定位的作用。
Development. 1999 Jun;126(11):2527-38. doi: 10.1242/dev.126.11.2527.
3
Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.果蝇中eve条纹2增强子进化的功能分析:保守与变化的调控规则
Development. 1998 Mar;125(5):949-58. doi: 10.1242/dev.125.5.949.
4
Diverse Cis-Regulatory Mechanisms Contribute to Expression Evolution of Tandem Gene Duplicates.多种顺式调控机制导致串联基因重复的表达进化。
Mol Biol Evol. 2017 Dec 1;34(12):3132-3147. doi: 10.1093/molbev/msx237.
5
Groucho-dependent repression by sloppy-paired 1 differentially positions anterior pair-rule stripes in the Drosophila embryo.果蝇胚胎中,由草率配对1介导的与格鲁乔相关的抑制作用差异定位前体节极性条纹。
Dev Biol. 2004 Dec 15;276(2):541-51. doi: 10.1016/j.ydbio.2004.09.025.
6
Anterior repression of a Drosophila stripe enhancer requires three position-specific mechanisms.果蝇条纹增强子的前部抑制需要三种位置特异性机制。
Development. 2002 Nov;129(21):4931-40. doi: 10.1242/dev.129.21.4931.
7
Conservation of regulatory elements controlling hairy pair-rule stripe formation.控制毛状体成对规则条纹形成的调控元件的保守性。
Development. 1993 Feb;117(2):585-96. doi: 10.1242/dev.117.2.585.
8
The Drosophila sloppy paired locus encodes two proteins involved in segmentation that show homology to mammalian transcription factors.果蝇的草率配对基因座编码两种参与体节形成的蛋白质,它们与哺乳动物转录因子具有同源性。
Genes Dev. 1992 Jun;6(6):1030-51. doi: 10.1101/gad.6.6.1030.
9
Localized expression of sloppy paired protein maintains the polarity of Drosophila parasegments.邋遢配对蛋白的局部表达维持果蝇副节的极性。
Genes Dev. 1994 Apr 15;8(8):899-913. doi: 10.1101/gad.8.8.899.
10
Evolution of developmental genes: molecular microevolution of enhancer sequences at the Ubx locus in Drosophila and its impact on developmental phenotypes.发育基因的进化:果蝇Ubx基因座增强子序列的分子微进化及其对发育表型的影响。
Mol Biol Evol. 2004 Feb;21(2):348-63. doi: 10.1093/molbev/msh025. Epub 2003 Dec 5.

引用本文的文献

1
Conservation of symmetry breaking at the level of chromatin accessibility between fly species with unrelated anterior determinants.在具有不相关前部决定因素的果蝇物种之间,染色质可及性水平上对称破坏的保守性。
bioRxiv. 2025 Jan 14:2025.01.13.632851. doi: 10.1101/2025.01.13.632851.
2
A Notch-dependent transcriptional mechanism controls expression of temporal patterning factors in medulla.Notch 依赖性转录机制控制着髓质中时间模式形成因子的表达。
Elife. 2022 Aug 30;11:e75879. doi: 10.7554/eLife.75879.
3
Anterior-posterior patterning of segments in Anopheles stephensi offers insights into the transition from sequential to simultaneous segmentation in holometabolous insects.

本文引用的文献

1
A cis-regulatory map of the Drosophila genome.果蝇基因组的顺式调控图谱。
Nature. 2011 Mar 24;471(7339):527-31. doi: 10.1038/nature09990.
2
Shadow enhancers foster robustness of Drosophila gastrulation.阴影增强子促进果蝇原肠胚形成的稳健性。
Curr Biol. 2010 Sep 14;20(17):1562-7. doi: 10.1016/j.cub.2010.07.043.
3
Phenotypic robustness conferred by apparently redundant transcriptional enhancers.显然冗余转录增强子赋予的表型稳健性。
斯氏按蚊中体节的前后模式为全变态昆虫从顺序分节向同时分节的转变提供了见解。
J Exp Zool B Mol Dev Evol. 2023 Mar;340(2):116-130. doi: 10.1002/jez.b.23102. Epub 2021 Nov 3.
4
Enhancer redundancy in development and disease.增强子冗余在发育和疾病中的作用。
Nat Rev Genet. 2021 May;22(5):324-336. doi: 10.1038/s41576-020-00311-x. Epub 2021 Jan 12.
5
Transcriptional Enhancers in .转录增强子在 … 中。
Genetics. 2020 Sep;216(1):1-26. doi: 10.1534/genetics.120.301370.
6
Zygotic pioneer factor activity of Odd-paired/Zic is necessary for late function of the segmentation network.合子先驱因子 Odd-paired/Zic 的活性对于体节形成网络的晚期功能是必要的。
Elife. 2020 Apr 29;9:e53916. doi: 10.7554/eLife.53916.
7
Redundant and Cryptic Enhancer Activities of the Gene.基因的冗余和复杂的增强子活动。
Genetics. 2019 May;212(1):343-360. doi: 10.1534/genetics.119.301985. Epub 2019 Mar 6.
8
Studying Transcriptional Enhancers: The Founder Fallacy, Validation Creep, and Other Biases.研究转录增强子:奠基者谬误、验证蔓延和其他偏见。
Trends Genet. 2019 Feb;35(2):93-103. doi: 10.1016/j.tig.2018.11.004. Epub 2018 Dec 13.
9
A damped oscillator imposes temporal order on posterior gap gene expression in Drosophila.阻尼振荡器为果蝇后间隙基因表达赋予时间顺序。
PLoS Biol. 2018 Feb 16;16(2):e2003174. doi: 10.1371/journal.pbio.2003174. eCollection 2018 Feb.
10
Different modes of enhancer-specific regulation by Runt and Even-skipped during segmentation.在胚胎分节过程中,Runt和Even-skipped对增强子特异性调控的不同模式。
Mol Biol Cell. 2017 Mar 1;28(5):681-691. doi: 10.1091/mbc.E16-09-0630. Epub 2017 Jan 11.
Nature. 2010 Jul 22;466(7305):490-3. doi: 10.1038/nature09158. Epub 2010 May 30.
4
Non-additive interactions involving two distinct elements mediate sloppy-paired regulation by pair-rule transcription factors.非加性相互作用涉及两个不同的元素,介导由配对规则转录因子介导的宽松配对调节。
Dev Biol. 2010 Aug 15;344(2):1048-59. doi: 10.1016/j.ydbio.2010.04.026. Epub 2010 May 6.
5
Odd paired transcriptional activation of decapentaplegic in the Drosophila eye/antennal disc is cell autonomous but indirect.果蝇眼/触角盘内成对异形转录激活 decapentaplegic 是细胞自主但间接的。
Dev Biol. 2010 Jul 1;343(1-2):167-77. doi: 10.1016/j.ydbio.2010.04.003. Epub 2010 Apr 18.
6
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles.JASPAR 2010:转录因子结合谱的大幅扩展的开放获取数据库。
Nucleic Acids Res. 2010 Jan;38(Database issue):D105-10. doi: 10.1093/nar/gkp950. Epub 2009 Nov 11.
7
The bithorax complex of Drosophila an exceptional Hox cluster.果蝇的双胸复合体——一个特殊的同源异型基因簇。
Curr Top Dev Biol. 2009;88:1-33. doi: 10.1016/S0070-2153(09)88001-0.
8
Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster.用于黑腹果蝇转基因研究的多功能P[acman]细菌人工染色体文库。
Nat Methods. 2009 Jun;6(6):431-4. doi: 10.1038/nmeth.1331.
9
Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos.果蝇胚胎中多梳蛋白和三胸蛋白染色质景观的功能解剖学
PLoS Biol. 2009 Jan 13;7(1):e13. doi: 10.1371/journal.pbio.1000013.
10
The DNA-binding Polycomb-group protein Pleiohomeotic maintains both active and repressed transcriptional states through a single site.DNA结合多梳蛋白家族蛋白多同源结构域蛋白通过单个位点维持活跃和抑制的转录状态。
Development. 2008 Dec;135(24):4131-9. doi: 10.1242/dev.024554.