McAliley James H, Bruce David A
Department of Chemical and Biomolecular Engineering, Clemson University, Clemson, SC 29634-0909.
J Chem Theory Comput. 2011 Jan 1;7(11):3756-3767. doi: 10.1021/ct200251x.
Polylactide is a biodegradable polymer that is widely used for biomedical applications, and it is a replacement for some petroleum based polymers in applications that range from packaging to carpeting. Efforts to characterize and further enhance polylactide based systems using molecular simulations have to this point been hindered by the lack of accurate atomistic models for the polymer. Thus, we present force field parameters specifically suited for molecular modeling of PLA. The model, which we refer to as PLAFF3, is based on a combination of the OPLS and CHARMM force fields, with modifications to bonded and nonbonded parameters. Dihedral angle parameters were adjusted to reproduce DFT data using newly developed CMAP dihedral cross terms, and the model was further adjusted to reproduce experimentally resolved crystal structure conformations, melt density, volume expansivity, and the glass transition temperature of PLA. We recommend the use of PLAFF3 in modeling PLA in its crystalline or amorphous states and have provided the necessary input files required for the publicly available molecular dynamics code GROMACS.
聚乳酸是一种可生物降解的聚合物,广泛应用于生物医学领域,并且在从包装到地毯等一系列应用中,它是一些石油基聚合物的替代品。到目前为止,由于缺乏聚合物的精确原子模型,利用分子模拟来表征和进一步改进基于聚乳酸的体系的工作受到了阻碍。因此,我们提出了特别适用于聚乳酸分子建模的力场参数。我们将该模型称为PLAFF3,它基于OPLS和CHARMM力场的组合,并对键合和非键合参数进行了修改。使用新开发的CMAP二面角交叉项调整二面角参数以重现密度泛函理论(DFT)数据,并进一步调整该模型以重现实验解析的晶体结构构象、熔体密度、体积膨胀系数和聚乳酸的玻璃化转变温度。我们建议在对聚乳酸的结晶态或非晶态进行建模时使用PLAFF3,并提供了公开可用的分子动力学代码GROMACS所需的必要输入文件。