Suppr超能文献

用于聚乳酸分子模拟的力场参数的开发。

Development of force field parameters for molecular simulation of polylactide.

作者信息

McAliley James H, Bruce David A

机构信息

Department of Chemical and Biomolecular Engineering, Clemson University, Clemson, SC 29634-0909.

出版信息

J Chem Theory Comput. 2011 Jan 1;7(11):3756-3767. doi: 10.1021/ct200251x.

Abstract

Polylactide is a biodegradable polymer that is widely used for biomedical applications, and it is a replacement for some petroleum based polymers in applications that range from packaging to carpeting. Efforts to characterize and further enhance polylactide based systems using molecular simulations have to this point been hindered by the lack of accurate atomistic models for the polymer. Thus, we present force field parameters specifically suited for molecular modeling of PLA. The model, which we refer to as PLAFF3, is based on a combination of the OPLS and CHARMM force fields, with modifications to bonded and nonbonded parameters. Dihedral angle parameters were adjusted to reproduce DFT data using newly developed CMAP dihedral cross terms, and the model was further adjusted to reproduce experimentally resolved crystal structure conformations, melt density, volume expansivity, and the glass transition temperature of PLA. We recommend the use of PLAFF3 in modeling PLA in its crystalline or amorphous states and have provided the necessary input files required for the publicly available molecular dynamics code GROMACS.

摘要

聚乳酸是一种可生物降解的聚合物,广泛应用于生物医学领域,并且在从包装到地毯等一系列应用中,它是一些石油基聚合物的替代品。到目前为止,由于缺乏聚合物的精确原子模型,利用分子模拟来表征和进一步改进基于聚乳酸的体系的工作受到了阻碍。因此,我们提出了特别适用于聚乳酸分子建模的力场参数。我们将该模型称为PLAFF3,它基于OPLS和CHARMM力场的组合,并对键合和非键合参数进行了修改。使用新开发的CMAP二面角交叉项调整二面角参数以重现密度泛函理论(DFT)数据,并进一步调整该模型以重现实验解析的晶体结构构象、熔体密度、体积膨胀系数和聚乳酸的玻璃化转变温度。我们建议在对聚乳酸的结晶态或非晶态进行建模时使用PLAFF3,并提供了公开可用的分子动力学代码GROMACS所需的必要输入文件。

相似文献

3
Development and Validation of the Quantum Mechanical Bespoke Protein Force Field.量子力学定制蛋白质力场的开发与验证。
ACS Omega. 2019 Aug 27;4(11):14537-14550. doi: 10.1021/acsomega.9b01769. eCollection 2019 Sep 10.

引用本文的文献

9
Grafting-Induced Structural Ordering of Lactide Chains.接枝诱导的丙交酯链结构有序化
Polymers (Basel). 2019 Dec 11;11(12):2056. doi: 10.3390/polym11122056.

本文引用的文献

3
Glass transition of polymers: atomistic simulation versus experiments.聚合物的玻璃化转变:原子模拟与实验
Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Dec;74(6 Pt 1):061803. doi: 10.1103/PhysRevE.74.061803. Epub 2006 Dec 28.
4
GROMACS: fast, flexible, and free.GROMACS:快速、灵活且免费。
J Comput Chem. 2005 Dec;26(16):1701-18. doi: 10.1002/jcc.20291.
5
An overview of polylactides as packaging materials.聚乳酸作为包装材料概述。
Macromol Biosci. 2004 Sep 16;4(9):835-64. doi: 10.1002/mabi.200400043.
7
Synthetic biodegradable polymers as orthopedic devices.作为骨科器械的合成可生物降解聚合物。
Biomaterials. 2000 Dec;21(23):2335-46. doi: 10.1016/s0142-9612(00)00101-0.
9
Canonical dynamics: Equilibrium phase-space distributions.正则动力学:平衡相空间分布
Phys Rev A Gen Phys. 1985 Mar;31(3):1695-1697. doi: 10.1103/physreva.31.1695.

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验