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完整基因组序列及广泛宿主范围 T4 样噬菌体 phiAS5 感染鲑鱼气单胞菌亚种的特性分析。

Complete genome sequence and characterization of a broad-host range T4-like bacteriophage phiAS5 infecting Aeromonas salmonicida subsp. salmonicida.

机构信息

Laboratory of Aquatic Animal Medicine, College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul National University, Seoul 151-742, Republic of Korea.

出版信息

Vet Microbiol. 2012 May 25;157(1-2):164-71. doi: 10.1016/j.vetmic.2011.12.016. Epub 2011 Dec 19.

Abstract

In this study, we report one lytic Myoviridae bacteriophage (phage) infecting Aeromonas salmonicida subsp. salmonicida. The phage (named as phiAS5) was isolated from environmental river waters in Korea, and showed broad infectivity to other bacterial species in the family Aeromonadaceae as well as antibiotic-resistant A. salmonicida subsp. salmonicida strains. The biological properties and complete genome of phiAS5 were simultaneously investigated. The complete genome of phiAS5 composed of linear double-stranded DNA of 225,268 bp with G+C content of 43.0%, and encoded 343 putative ORFs, 69 putative promoters, 33 transcriptional terminator regions and 24 tRNA-encoding genes. A high degree of similarity to other T4-like Aeromonas phage was found in most ORFs of phiAS5. Therefore, the genome of phiAS5 was further compared with T4 phage and the closest relative, Aeromonas phage Aeh1, and the result demonstrated that it could be classified as a new member of the T4-like group. The bacteriolytic activity of phiAS5 against A. salmonicida subsp. salmonicida was evaluated at different doses of multiplicity of infection using one each of virulent strain that possesses the ascV gene and multi-drug resistant strain, and the results proved to be efficient for the reduction of bacterial growth. Based on these results, phiAS5 may have the potential for reducing the impacts of virulent or antibiotic-resistant A. salmonicida subsp. salmonicida in aquaculture and may also advance our understanding of the biodiversity of T4-like Aeromonas phages.

摘要

在这项研究中,我们报告了一种裂解性肌尾噬菌体(噬菌体)感染鲑鱼气单胞菌亚种。该噬菌体(命名为 phiAS5)是从韩国的环境河水中分离出来的,对气单胞菌科的其他细菌物种以及抗抗生素的鲑鱼气单胞菌亚种具有广泛的感染力。同时研究了 phiAS5 的生物学特性和完整基因组。phiAS5 的完整基因组由 225268bp 的线性双链 DNA 组成,G+C 含量为 43.0%,编码 343 个推定的 ORF、69 个推定的启动子、33 个转录终止区和 24 个 tRNA 编码基因。phiAS5 的大多数 ORF 与其他 T4 样气单胞菌噬菌体高度相似。因此,phiAS5 的基因组与 T4 噬菌体和最接近的亲缘关系 Aeromonas 噬菌体 Aeh1 进一步比较,结果表明它可以归类为 T4 样群的新成员。用携带 ascV 基因的毒力菌株和多药耐药菌株各一株,在不同感染复数剂量下评估了 phiAS5 对鲑鱼气单胞菌亚种的溶菌活性,结果证明对细菌生长的减少非常有效。基于这些结果,phiAS5 可能具有减少水产养殖中有毒或抗抗生素鲑鱼气单胞菌亚种的影响的潜力,也可能增进我们对 T4 样气单胞菌噬菌体生物多样性的理解。

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