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使用压缩感知技术的更快 STORM。

Faster STORM using compressed sensing.

机构信息

Nuclear and Radiological Engineering Program, The George W. Woodruff School of Mechanical Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA.

出版信息

Nat Methods. 2012 Apr 22;9(7):721-3. doi: 10.1038/nmeth.1978.

DOI:10.1038/nmeth.1978
PMID:22522657
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3477591/
Abstract

In super-resolution microscopy methods based on single-molecule switching, the rate of accumulating single-molecule activation events often limits the time resolution. Here we developed a sparse-signal recovery technique using compressed sensing to analyze images with highly overlapping fluorescent spots. This method allows an activated fluorophore density an order of magnitude higher than what conventional single-molecule fitting methods can handle. Using this method, we demonstrated imaging microtubule dynamics in living cells with a time resolution of 3 s.

摘要

在基于单分子开关的超分辨率显微镜方法中,累积单分子激活事件的速率通常会限制时间分辨率。在这里,我们开发了一种使用压缩感知的稀疏信号恢复技术来分析荧光斑点高度重叠的图像。这种方法可以使激活荧光团的密度比传统的单分子拟合方法高一个数量级。使用这种方法,我们展示了在活细胞中以 3 秒的时间分辨率成像微管动力学的实验结果。

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Faster STORM using compressed sensing.使用压缩感知技术的更快 STORM。
Nat Methods. 2012 Apr 22;9(7):721-3. doi: 10.1038/nmeth.1978.
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Multi-colour direct STORM with red emitting carbocyanines.多色直接 STORM 与红色发射碳菁染料。
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High-density 3D single molecular analysis based on compressed sensing.基于压缩感知的高密度 3D 单分子分析。
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Real-time computation of subdiffraction-resolution fluorescence images.亚衍射分辨率荧光图像的实时计算。
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Microtubule dynamics reconstituted in vitro and imaged by single-molecule fluorescence microscopy.微管动力学在体外重建并通过单分子荧光显微镜成像。
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本文引用的文献

1
High-density localization of active molecules using Structured Sparse Model and Bayesian Information Criterion.使用结构化稀疏模型和贝叶斯信息准则对活性分子进行高密度定位
Opt Express. 2011 Aug 29;19(18):16963-74. doi: 10.1364/OE.19.016963.
2
Simultaneous multiple-emitter fitting for single molecule super-resolution imaging.用于单分子超分辨率成像的同时多发射器拟合
Biomed Opt Express. 2011 Apr 29;2(5):1377-93. doi: 10.1364/BOE.2.001377.
3
Fast, three-dimensional super-resolution imaging of live cells.快速、三维活细胞超分辨率成像。
Light Sci Appl. 2025 Jul 14;14(1):244. doi: 10.1038/s41377-025-01878-y.
4
Methods for Extracellular Vesicle Isolation: Relevance for Encapsulated miRNAs in Disease Diagnosis and Treatment.细胞外囊泡分离方法:对疾病诊断和治疗中封装的微小RNA的相关性
Genes (Basel). 2025 Mar 12;16(3):330. doi: 10.3390/genes16030330.
5
Computational Super-Resolution: An Odyssey in Harnessing Priors to Enhance Optical Microscopy Resolution.计算超分辨率:利用先验知识提升光学显微镜分辨率的探索之旅。
Anal Chem. 2025 Mar 11;97(9):4763-4792. doi: 10.1021/acs.analchem.4c07047. Epub 2025 Feb 27.
6
Localizing axial dense emitters based on single-helix point spread function and compressed sensing.基于单螺旋点扩散函数和压缩感知对轴向密集发射器进行定位
Nanophotonics. 2025 Feb 13;14(4):535-543. doi: 10.1515/nanoph-2024-0516. eCollection 2025 Feb.
7
Metabolic nanoscopy enhanced by experimental and computational approaches.通过实验和计算方法增强的代谢纳米显微镜技术。
Npj Imaging. 2024;2(1):55. doi: 10.1038/s44303-024-00062-y. Epub 2024 Dec 12.
8
Digital-SMLM for precisely localizing emitters within the diffraction limit.用于在衍射极限内精确定位发射器的数字单分子定位显微镜技术
Nanophotonics. 2024 Jun 6;13(19):3647-3661. doi: 10.1515/nanoph-2023-0936. eCollection 2024 Aug.
9
Super resolution reconstruction of fluorescence microscopy images by a convolutional network with physical priors.基于物理先验的卷积网络实现荧光显微镜图像的超分辨率重建
Biomed Opt Express. 2024 Nov 1;15(11):6638-6653. doi: 10.1364/BOE.537589.
10
Roadmap on Label-Free Super-Resolution Imaging.无标记超分辨率成像路线图
Laser Photon Rev. 2023 Dec;17(12). doi: 10.1002/lpor.202200029. Epub 2023 Oct 30.
Nat Methods. 2011 Jun;8(6):499-508. doi: 10.1038/nmeth.1605. Epub 2011 May 8.
4
DAOSTORM: an algorithm for high- density super-resolution microscopy.DAOSTORM:一种用于高密度超分辨率显微镜的算法。
Nat Methods. 2011 Apr;8(4):279-80. doi: 10.1038/nmeth0411-279.
5
Breaking the diffraction barrier: super-resolution imaging of cells.突破衍射极限:细胞的超分辨率成像。
Cell. 2010 Dec 23;143(7):1047-58. doi: 10.1016/j.cell.2010.12.002.
6
Optimized localization analysis for single-molecule tracking and super-resolution microscopy.优化单分子追踪和超分辨率显微镜的定位分析。
Nat Methods. 2010 May;7(5):377-81. doi: 10.1038/nmeth.1447. Epub 2010 Apr 4.
7
Search for IMRT inverse plans with piecewise constant fluence maps using compressed sensing techniques.使用压缩感知技术搜索具有分段常数注量图的调强放射治疗逆向计划。
Med Phys. 2009 May;36(5):1895-905. doi: 10.1118/1.3110163.
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Microscopy and its focal switch.显微镜及其焦点切换。
Nat Methods. 2009 Jan;6(1):24-32. doi: 10.1038/nmeth.1291.
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Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution.全细胞3D随机光学重建显微镜以纳米级分辨率揭示细胞结构之间的相互作用。
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