文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

配对肿瘤和转移性嗅神经母细胞瘤的正常全基因组测序。

Paired tumor and normal whole genome sequencing of metastatic olfactory neuroblastoma.

机构信息

Virginia G. Piper Cancer Center Clinical Trials at Scottsdale Healthcare (VGPCC), Scottsdale, Arizona, United States of America.

出版信息

PLoS One. 2012;7(5):e37029. doi: 10.1371/journal.pone.0037029. Epub 2012 May 23.


DOI:10.1371/journal.pone.0037029
PMID:22649506
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3359355/
Abstract

BACKGROUND: Olfactory neuroblastoma (ONB) is a rare cancer of the sinonasal tract with little molecular characterization. We performed whole genome sequencing (WGS) on paired normal and tumor DNA from a patient with metastatic-ONB to identify the somatic alterations that might be drivers of tumorigenesis and/or metastatic progression. METHODOLOGY/PRINCIPAL FINDINGS: Genomic DNA was isolated from fresh frozen tissue from a metastatic lesion and whole blood, followed by WGS at >30X depth, alignment and mapping, and mutation analyses. Sanger sequencing was used to confirm selected mutations. Sixty-two somatic short nucleotide variants (SNVs) and five deletions were identified inside coding regions, each causing a non-synonymous DNA sequence change. We selected seven SNVs and validated them by Sanger sequencing. In the metastatic ONB samples collected several months prior to WGS, all seven mutations were present. However, in the original surgical resection specimen (prior to evidence of metastatic disease), mutations in KDR, MYC, SIN3B, and NLRC4 genes were not present, suggesting that these were acquired with disease progression and/or as a result of post-treatment effects. CONCLUSIONS/SIGNIFICANCE: This work provides insight into the evolution of ONB cancer cells and provides a window into the more complex factors, including tumor clonality and multiple driver mutations.

摘要

背景:嗅神经母细胞瘤(ONB)是一种罕见的鼻腔鼻窦肿瘤,分子特征研究较少。我们对一名转移性 ONB 患者的配对正常和肿瘤 DNA 进行了全基因组测序(WGS),以鉴定可能导致肿瘤发生和/或转移进展的体细胞改变。

方法/主要发现:从转移性病变和全血的新鲜冷冻组织中分离基因组 DNA,然后进行 >30X 深度的 WGS、比对和映射以及突变分析。Sanger 测序用于确认选定的突变。在编码区内鉴定出 62 个体细胞短核苷酸变异(SNV)和 5 个缺失,每个变异都会导致非同义 DNA 序列改变。我们选择了七个 SNV 并通过 Sanger 测序进行了验证。在 WGS 前几个月采集的转移性 ONB 样本中,所有七个突变均存在。然而,在最初的手术切除标本(在有转移性疾病的证据之前)中,KDR、MYC、SIN3B 和 NLRC4 基因的突变不存在,这表明这些突变是在疾病进展过程中获得的,或是治疗后效应的结果。

结论/意义:这项工作深入了解了 ONB 癌细胞的进化,并为更复杂的因素提供了一个窗口,包括肿瘤克隆性和多个驱动突变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/655f/3359355/71f0b2bfccc2/pone.0037029.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/655f/3359355/be37fa26c0cf/pone.0037029.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/655f/3359355/71f0b2bfccc2/pone.0037029.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/655f/3359355/be37fa26c0cf/pone.0037029.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/655f/3359355/71f0b2bfccc2/pone.0037029.g002.jpg

相似文献

[1]
Paired tumor and normal whole genome sequencing of metastatic olfactory neuroblastoma.

PLoS One. 2012-5-23

[2]
Comprehensive molecular profiling of advanced/metastatic olfactory neuroblastomas.

PLoS One. 2018-1-11

[3]
Genetic and molecular alterations in olfactory neuroblastoma: implications for pathogenesis, prognosis and treatment.

Oncotarget. 2016-8-9

[4]
Relationship of p53 gene alterations with tumor progression and recurrence in olfactory neuroblastoma.

Am J Surg Pathol. 1996-6

[5]
Targeted 595-gene genomic profiling demonstrates low tumor mutational burden in olfactory neuroblastoma.

Int Forum Allergy Rhinol. 2021-1

[6]
Comprehensive Molecular Profiling of Olfactory Neuroblastoma Identifies Potentially Targetable Amplifications.

Mol Cancer Res. 2017-8-3

[7]
Recurrent Olfactory Neuroblastoma Treated With Cetuximab and Sunitinib: A Case Report.

Medicine (Baltimore). 2016-5

[8]
Expression of the human Achaete-scute 1 gene in olfactory neuroblastoma (esthesioneuroblastoma).

J Neurooncol. 1995-10

[9]
Cytopathologic features of olfactory neuroblastoma.

Cancer. 2006-4-25

[10]
Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers.

Genome Med. 2021-4-26

引用本文的文献

[1]
Updated Insights into the Molecular Pathophysiology of Olfactory Neuroblastoma Using Multi-Omics Analysis.

J Pers Med. 2025-7-13

[2]
Advancing Precision Medicine: The Role of Genetic Testing and Sequencing Technologies in Identifying Biological Markers for Rare Cancers.

Cancer Med. 2025-4

[3]
Olfactory neuroblastoma mimics molecular heterogeneity and lineage trajectories of small-cell lung cancer.

Cancer Cell. 2024-6-10

[4]
Update on olfactory neuroblastoma.

Virchows Arch. 2024-4

[5]
Genomic characterization of an esthesioneuroblastoma with spinal metastases: illustrative case.

J Neurosurg Case Lessons. 2023-12-4

[6]
Tumors of the Nose and Paranasal Sinuses: Promoting Factors and Molecular Mechanisms-A Systematic Review.

Int J Mol Sci. 2023-1-31

[7]
Dramatic response to targeted therapy in an aggressive olfactory neuroblastoma: illustrative case.

J Neurosurg Case Lessons. 2022-6-13

[8]
The genomics and epigenetics of olfactory neuroblastoma: A systematic review.

Laryngoscope Investig Otolaryngol. 2021-6-7

[9]
Genomic analysis identifies frequent deletions of Dystrophin in olfactory neuroblastoma.

Nat Commun. 2018-12-21

[10]
Comprehensive molecular profiling of advanced/metastatic olfactory neuroblastomas.

PLoS One. 2018-1-11

本文引用的文献

[1]
Neoadjuvant concurrent chemoradiation for advanced esthesioneuroblastoma: a case series and review of the literature.

J Clin Oncol. 2011-5-1

[2]
Notch1 expression predicts an unfavorable prognosis and serves as a therapeutic target of patients with neuroblastoma.

Clin Cancer Res. 2010-8-24

[3]
When, how and why to treat the neck in patients with esthesioneuroblastoma: a review.

Eur Arch Otorhinolaryngol. 2010-8-13

[4]
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Genome Res. 2010-7-19

[5]
Olfactory neuroblastoma.

Head Neck Pathol. 2009-9

[6]
A small-cell lung cancer genome with complex signatures of tobacco exposure.

Nature. 2009-12-16

[7]
A comprehensive catalogue of somatic mutations from a human cancer genome.

Nature. 2009-12-16

[8]
Bortezomib sensitizes primary human esthesioneuroblastoma cells to TRAIL-induced apoptosis.

J Neurooncol. 2009-9-20

[9]
Activation of sonic hedgehog signaling pathway in olfactory neuroblastoma.

Oncology. 2009

[10]
KDR activating mutations in human angiosarcomas are sensitive to specific kinase inhibitors.

Cancer Res. 2009-9-15

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索