Virginia G. Piper Cancer Center Clinical Trials at Scottsdale Healthcare (VGPCC), Scottsdale, Arizona, United States of America.
PLoS One. 2012;7(5):e37029. doi: 10.1371/journal.pone.0037029. Epub 2012 May 23.
BACKGROUND: Olfactory neuroblastoma (ONB) is a rare cancer of the sinonasal tract with little molecular characterization. We performed whole genome sequencing (WGS) on paired normal and tumor DNA from a patient with metastatic-ONB to identify the somatic alterations that might be drivers of tumorigenesis and/or metastatic progression. METHODOLOGY/PRINCIPAL FINDINGS: Genomic DNA was isolated from fresh frozen tissue from a metastatic lesion and whole blood, followed by WGS at >30X depth, alignment and mapping, and mutation analyses. Sanger sequencing was used to confirm selected mutations. Sixty-two somatic short nucleotide variants (SNVs) and five deletions were identified inside coding regions, each causing a non-synonymous DNA sequence change. We selected seven SNVs and validated them by Sanger sequencing. In the metastatic ONB samples collected several months prior to WGS, all seven mutations were present. However, in the original surgical resection specimen (prior to evidence of metastatic disease), mutations in KDR, MYC, SIN3B, and NLRC4 genes were not present, suggesting that these were acquired with disease progression and/or as a result of post-treatment effects. CONCLUSIONS/SIGNIFICANCE: This work provides insight into the evolution of ONB cancer cells and provides a window into the more complex factors, including tumor clonality and multiple driver mutations.
背景:嗅神经母细胞瘤(ONB)是一种罕见的鼻腔鼻窦肿瘤,分子特征研究较少。我们对一名转移性 ONB 患者的配对正常和肿瘤 DNA 进行了全基因组测序(WGS),以鉴定可能导致肿瘤发生和/或转移进展的体细胞改变。
方法/主要发现:从转移性病变和全血的新鲜冷冻组织中分离基因组 DNA,然后进行 >30X 深度的 WGS、比对和映射以及突变分析。Sanger 测序用于确认选定的突变。在编码区内鉴定出 62 个体细胞短核苷酸变异(SNV)和 5 个缺失,每个变异都会导致非同义 DNA 序列改变。我们选择了七个 SNV 并通过 Sanger 测序进行了验证。在 WGS 前几个月采集的转移性 ONB 样本中,所有七个突变均存在。然而,在最初的手术切除标本(在有转移性疾病的证据之前)中,KDR、MYC、SIN3B 和 NLRC4 基因的突变不存在,这表明这些突变是在疾病进展过程中获得的,或是治疗后效应的结果。
结论/意义:这项工作深入了解了 ONB 癌细胞的进化,并为更复杂的因素提供了一个窗口,包括肿瘤克隆性和多个驱动突变。
Int Forum Allergy Rhinol. 2021-1
Medicine (Baltimore). 2016-5
Cancer. 2006-4-25
Virchows Arch. 2024-4
J Neurosurg Case Lessons. 2023-12-4
J Neurosurg Case Lessons. 2022-6-13
Laryngoscope Investig Otolaryngol. 2021-6-7
Nat Commun. 2018-12-21
Eur Arch Otorhinolaryngol. 2010-8-13
Head Neck Pathol. 2009-9
J Neurooncol. 2009-9-20