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严寒脱硫弯杆菌属,新属,一种从永久性寒冷海洋沉积物中分离出来的嗜冷硫酸盐还原菌。

Desulfoconvexum algidum gen. nov., sp. nov., a psychrophilic sulfate-reducing bacterium isolated from a permanently cold marine sediment.

机构信息

Max-Planck Institute for Marine Microbiology, Bremen, Germany.

Bremen Institute for Materials Testing, Bremen, Germany.

出版信息

Int J Syst Evol Microbiol. 2013 Mar;63(Pt 3):959-964. doi: 10.1099/ijs.0.043703-0. Epub 2012 Jun 1.

DOI:10.1099/ijs.0.043703-0
PMID:22659505
Abstract

A sulfate-reducing bacterium, designated JHA1(T), was isolated from a permanently cold marine sediment sampled in an Artic fjord on the north-west coast of Svalbard. The isolate was originally enriched at 4 °C in a highly diluted liquid culture amended with hydrogen and sulfate. Strain JHA1(T) was a psychrophile, growing fastest between 14 and 16 °C and not growing above 20 °C. Fastest growth was found at neutral pH (pH 7.2-7.4) and at marine concentrations of NaCl (20-30 g l(-1)). Phylogenetic analysis of 16S rRNA gene sequences revealed that strain JHA1(T) was a member of the family Desulfobacteraceae in the Deltaproteobacteria. The isolate shared 99 % 16S rRNA gene sequence similarity with an environmental sequence obtained from permanently cold Antarctic sediment. The closest recognized relatives were Desulfobacula phenolica DSM 3384(T) and Desulfobacula toluolica DSM 7467(T) (both <95 % sequence similarity). In contrast to its closest phylogenetic relatives, strain JHA1(T) grew chemolithoautotrophically with hydrogen as an electron donor. CO dehydrogenase activity indicated the operation of the reductive acetyl-CoA pathway for inorganic carbon assimilation. Beside differences in physiology and morphology, strain JHA1(T) could be distinguished chemotaxonomically from the genus Desulfobacula by the absence of the cellular fatty acid C16 : 0 10-methyl. Phylogenetic differentiation from other genera was further supported by DsrAB and AprBA sequence analysis. Based on the described phylogenetic and phenotypic differences between strain JHA1(T) and its closest relatives, the establishment of a novel genus and a novel species, Desulfoconvexum algidum gen. nov., sp. nov. is proposed. The type strain is JHA1(T) ( = DSM 21856(T)  = JCM 16085(T)).

摘要

从斯瓦尔巴西北海岸北极峡湾的永久性冷海洋沉积物中分离到一株硫酸盐还原菌,命名为 JHA1(T)。该分离株最初在高度稀释的液体培养基中以氢和硫酸盐为补充物,在 4°C 下富集。菌株 JHA1(T)是一种嗜冷菌,在 14 至 16°C 之间生长最快,在 20°C 以上不生长。在中性 pH(pH 7.2-7.4)和海洋浓度的 NaCl(20-30 g l(-1))下生长最快。16S rRNA 基因序列的系统发育分析表明,菌株 JHA1(T)是δ变形菌纲脱硫杆菌科的一员。该分离株与从永久性寒冷的南极沉积物中获得的环境序列的 16S rRNA 基因相似度为 99%。最接近的公认亲缘关系是脱硫杆菌属的脱硫酸酚菌(Desulfobacula phenolica)DSM 3384(T)和脱硫杆菌属的甲苯脱硫酸菌(Desulfobacula toluolica)DSM 7467(T)(相似度均<95%)。与最接近的系统发育亲缘关系相反,菌株 JHA1(T)以氢作为电子供体进行化能自养生长。CO 脱氢酶活性表明存在用于无机碳同化的还原性乙酰辅酶 A 途径。除了在生理学和形态学上的差异外,菌株 JHA1(T)还可以通过缺乏细胞脂肪酸 C16:0 10-甲基来与脱硫杆菌属区分开来。基于菌株 JHA1(T)与其最接近的亲缘关系在描述的系统发育和表型上的差异,提出建立一个新属和一个新种,即 Algidum 属的 Algidum algidum gen. nov.,sp. nov.。该模式株是 JHA1(T)(=DSM 21856(T)=JCM 16085(T))。

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