Institute of Medical Statistics, Computer Sciences and Documentation, Jena University Hospital, Friedrich Schiller University Jena, Bachstrasse 18, 07743 Jena, Germany.
Comput Math Methods Med. 2012;2012:910380. doi: 10.1155/2012/910380. Epub 2012 May 14.
Network motifs, overrepresented small local connection patterns, are assumed to act as functional meaningful building blocks of a network and, therefore, received considerable attention for being useful for understanding design principles and functioning of networks. We present an extension of the original approach to network motif detection in single, directed networks without vertex labeling to the case of a sample of directed networks with pairwise different vertex labels. A characteristic feature of this approach to network motif detection is that subnetwork counts are derived from the whole sample and the statistical tests are adjusted accordingly to assign significance to the counts. The associated computations are efficient since no simulations of random networks are involved. The motifs obtained by this approach also comprise the vertex labeling and its associated information and are characteristic of the sample. Finally, we apply this approach to describe the intricate topology of a sample of vertex-labeled networks which originate from a previous EEG study, where the processing of painful intracutaneous electrical stimuli and directed interactions within the neuromatrix of pain in patients with major depression and healthy controls was investigated. We demonstrate that the presented approach yields characteristic patterns of directed interactions while preserving their important topological information and omitting less relevant interactions.
网络基元,即过度表达的小局部连接模式,被认为是网络功能有意义的构建块,因此,它们对于理解网络的设计原则和功能非常有用,引起了相当大的关注。我们将原始的网络基元检测方法从没有顶点标记的单个有向网络扩展到具有成对不同顶点标记的有向网络样本的情况。这种网络基元检测方法的一个特点是,子网计数是从整个样本中得出的,并且相应地调整了统计检验,以赋予计数的显著性。相关的计算是高效的,因为不需要涉及随机网络的模拟。通过这种方法获得的基元还包括顶点标记及其相关信息,并且是样本特有的。最后,我们应用这种方法来描述一个来自先前 EEG 研究的顶点标记网络样本的复杂拓扑结构,在该研究中,研究了抑郁症患者和健康对照组在处理疼痛性皮内电刺激和疼痛神经基质内的定向相互作用时的情况。我们证明,所提出的方法在保留其重要拓扑信息和省略不相关相互作用的同时,产生了定向相互作用的特征模式。