Department of Theoretical and Computational Biophysics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):9887-92. doi: 10.1073/pnas.1121054109. Epub 2012 Jun 7.
Lipid-protein interactions play pivotal roles in biological membranes. Electron crystallographic studies of the lens-specific water channel aquaporin-0 (AQP0) revealed atomistic views of such interactions, by providing high-resolution structures of annular lipids surrounding AQP0. It remained unclear, however, whether these lipid structures are representative of the positions of unconstrained lipids surrounding an individual protein, and what molecular determinants define the lipid positions around AQP0. We addressed these questions by using molecular dynamics simulations and crystallographic refinement, and calculated time-averaged densities of dimyristoyl-phosphatidylcholine lipids around AQP0. Our simulations demonstrate that, although the experimentally determined crystallographic lipid positions are constrained by the crystal packing, they appropriately describe the behavior of unconstrained lipids around an individual AQP0 tetramer, and thus likely represent physiologically relevant lipid positions.While the acyl chains were well localized, the lipid head groups were not. Furthermore, in silico mutations showed that electrostatic interactions do not play a major role attracting these phospholipids towards AQP0. Instead, the mobility of the protein crucially modulates the lipid localization and explains the difference in lipid density between extracellular and cytoplasmic leaflets. Moreover, our simulations support a general mechanism in which membrane proteins laterally diffuse accompanied by several layers of localized lipids, with the positions of the annular lipids being influenced the most by the protein surface. We conclude that the acyl chains rather than the head groups define the positions of dimyristoyl-phosphatidylcholine lipids around AQP0. Lipid localization is largely determined by the mobility of the protein surface, whereas hydrogen bonds play an important but secondary role.
脂质-蛋白相互作用在生物膜中起着关键作用。对晶状体特异性水通道蛋白 aquaporin-0 (AQP0) 的电子晶体学研究通过提供 AQP0 周围环状脂质的高分辨率结构,揭示了这些相互作用的原子观点。然而,目前尚不清楚这些脂质结构是否代表围绕单个蛋白质的无约束脂质的位置,以及哪些分子决定因素定义了 AQP0 周围的脂质位置。我们通过使用分子动力学模拟和晶体学精修来解决这些问题,并计算了 AQP0 周围二肉豆蔻酰磷脂酰胆碱脂质的时间平均密度。我们的模拟表明,尽管实验确定的晶体学脂质位置受到晶体堆积的限制,但它们适当地描述了单个 AQP0 四聚体周围无约束脂质的行为,因此可能代表生理相关的脂质位置。虽然酰基链被很好地定位,但脂质头部基团没有。此外,计算机模拟突变表明,静电相互作用在吸引这些磷脂向 AQP0 移动方面不起主要作用。相反,蛋白质的流动性对脂质定位起着至关重要的作用,并解释了细胞外和细胞质小叶之间脂质密度的差异。此外,我们的模拟支持一种普遍机制,即膜蛋白伴随着几层局部化的脂质侧向扩散,而环形脂质的位置受蛋白质表面的影响最大。我们得出结论,二肉豆蔻酰磷脂酰胆碱脂质在 AQP0 周围的位置是由酰基链而不是头部基团决定的。脂质定位在很大程度上取决于蛋白质表面的流动性,而氢键则起着重要但次要的作用。