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加速 IDPs 的序列特异性分配。

Speeding up sequence specific assignment of IDPs.

机构信息

Bruker BioSpin GmbH, Silberstreifen, 76287 Rheinstetten, Germany.

出版信息

J Biomol NMR. 2012 Aug;53(4):293-301. doi: 10.1007/s10858-012-9639-0. Epub 2012 Jun 10.

Abstract

The characterization of intrinsically disordered proteins (IDPs) by NMR spectroscopy is made difficult by the extensive spectral overlaps. To overcome the intrinsic low-resolution of the spectra the introduction of high-dimensionality experiments is essential. We present here a set of high-resolution experiments based on direct (13)C-detection which proved useful in the assignment of α-synuclein, a paradigmatic IDP. In particular, we describe the implementation of 4D HCBCACON, HCCCON, HCBCANCO, 4/5D HNCACON and HNCANCO and 3/4D HCANCACO experiments, specifically tailored for spin system identification and backbone resonances sequential assignment. The use of non-uniform-sampling in the indirect dimension and of the H-flip approach to achieve longitudinal relaxation enhancement rendered the experiments very practical.

摘要

通过 NMR 光谱学对无规卷曲蛋白质 (IDPs) 进行特征描述,由于光谱的广泛重叠,使得其变得非常困难。为了克服光谱固有的低分辨率,引入高维实验是必不可少的。我们在此介绍了一组基于直接 (13)C 检测的高分辨率实验,这些实验在α-突触核蛋白(一个典型的 IDP)的分配中非常有用。特别是,我们描述了 4D HCBCACON、HCCCON、HCBCANCO、4/5D HNCACON 和 HNCANCO 以及 3/4D HCANCACO 实验的实现,这些实验专门针对自旋系统识别和骨架共振序列分配进行了优化。在间接维度中使用非均匀采样和 H 翻转方法实现纵向弛豫增强,使这些实验非常实用。

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