Institut de Química Computacional, Departament de Química, Universitat de Girona , Campus de Montilivi, Girona, 17071 Spain.
J Phys Chem B. 2012 Jul 12;116(27):7815-20. doi: 10.1021/jp303675h. Epub 2012 Jul 3.
Because hole transfer from nucleobases to amino acid residues in DNA-protein complexes can prevent oxidative damage of DNA in living cells, computational modeling of the process is of high interest. We performed MS-CASPT2 calculations of several model structures of π-stacked guanine and indole and derived electron-transfer (ET) parameters for these systems using the generalized Mulliken-Hush (GMH) method. We show that the two-state model commonly applied to treat thermal ET between adjacent donor and acceptor is of limited use for the considered systems because of the small gap between the ground and first excited states in the indole radical cation. The ET parameters obtained within the two-state GMH scheme can deviate significantly from the corresponding matrix elements of the two-state effective Hamiltonian based on the GMH treatment of three adiabatic states. The computed values of diabatic energies and electronic couplings provide benchmarks to assess the performance of less sophisticated computational methods.
由于碱基从 DNA-蛋白质复合物中的氨基酸残基转移可以防止活细胞中 DNA 的氧化损伤,因此该过程的计算建模具有很高的研究兴趣。我们使用 MS-CASPT2 方法对几个π-堆积的鸟嘌呤和吲哚模型结构进行了计算,并使用广义 Mulliken-Hush (GMH) 方法为这些体系推导了电子转移 (ET) 参数。我们表明,通常应用于处理相邻供体和受体之间热 ET 的两态模型对于所考虑的体系的用途有限,因为在吲哚自由基阳离子中基态和第一激发态之间的间隙很小。在两态 GMH 方案中获得的 ET 参数可能与基于 GMH 处理三个绝热态的两态有效哈密顿量的相应矩阵元有很大差异。计算出的非绝热能和电子耦合值提供了基准,可用于评估不那么复杂的计算方法的性能。