Suppr超能文献

体外溶瘤病毒的复杂空间动力学:数学和实验方法。

Complex spatial dynamics of oncolytic viruses in vitro: mathematical and experimental approaches.

机构信息

Department of Ecology and Evolutionary Biology, University of California, Irvine, California, United States of America.

出版信息

PLoS Comput Biol. 2012;8(6):e1002547. doi: 10.1371/journal.pcbi.1002547. Epub 2012 Jun 14.

Abstract

Oncolytic viruses replicate selectively in tumor cells and can serve as targeted treatment agents. While promising results have been observed in clinical trials, consistent success of therapy remains elusive. The dynamics of virus spread through tumor cell populations has been studied both experimentally and computationally. However, a basic understanding of the principles underlying virus spread in spatially structured target cell populations has yet to be obtained. This paper studies such dynamics, using a newly constructed recombinant adenovirus type-5 (Ad5) that expresses enhanced jellyfish green fluorescent protein (EGFP), AdEGFPuci, and grows on human 293 embryonic kidney epithelial cells, allowing us to track cell numbers and spatial patterns over time. The cells are arranged in a two-dimensional setting and allow virus spread to occur only to target cells within the local neighborhood. Despite the simplicity of the setup, complex dynamics are observed. Experiments gave rise to three spatial patterns that we call "hollow ring structure", "filled ring structure", and "disperse pattern". An agent-based, stochastic computational model is used to simulate and interpret the experiments. The model can reproduce the experimentally observed patterns, and identifies key parameters that determine which pattern of virus growth arises. The model is further used to study the long-term outcome of the dynamics for the different growth patterns, and to investigate conditions under which the virus population eliminates the target cells. We find that both the filled ring structure and disperse pattern of initial expansion are indicative of treatment failure, where target cells persist in the long run. The hollow ring structure is associated with either target cell extinction or low-level persistence, both of which can be viewed as treatment success. Interestingly, it is found that equilibrium properties of ordinary differential equations describing the dynamics in local neighborhoods in the agent-based model can predict the outcome of the spatial virus-cell dynamics, which has important practical implications. This analysis provides a first step towards understanding spatial oncolytic virus dynamics, upon which more detailed investigations and further complexity can be built.

摘要

溶瘤病毒在肿瘤细胞中选择性复制,可作为靶向治疗剂。虽然临床试验观察到了有希望的结果,但治疗的持续成功仍然难以实现。病毒在肿瘤细胞群体中的传播动力学已经在实验和计算上进行了研究。然而,对于空间结构靶细胞群体中病毒传播的基本原理仍缺乏基本的了解。本文使用新构建的表达增强型水母绿色荧光蛋白(EGFP)的重组腺病毒 5 型(Ad5)(AdEGFPuci)进行此类动力学研究,该病毒在人 293 胚胎肾上皮细胞上生长,使我们能够随时间跟踪细胞数量和空间模式。细胞排列在二维环境中,仅允许病毒在局部邻域内的靶细胞中传播。尽管设置简单,但仍观察到复杂的动力学。实验产生了三种空间模式,我们称之为“空心环结构”、“填充环结构”和“弥散模式”。基于代理的随机计算模型用于模拟和解释实验。该模型可以再现实验中观察到的模式,并确定决定病毒生长出现哪种模式的关键参数。该模型还用于研究不同生长模式下动力学的长期结果,并研究病毒种群消除靶细胞的条件。我们发现,初始扩展的填充环结构和弥散模式均表明治疗失败,靶细胞在长期内持续存在。空心环结构与靶细胞灭绝或低水平持续存在相关,这两者都可以视为治疗成功。有趣的是,发现描述基于代理的模型中局部邻域动力学的常微分方程的平衡特性可以预测空间病毒细胞动力学的结果,这具有重要的实际意义。这项分析是理解空间溶瘤病毒动力学的第一步,可以在此基础上进行更详细的调查和进一步的复杂性构建。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddd4/3375216/54f107efc20b/pcbi.1002547.g001.jpg

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验