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疏水性水合作用在蛋白质稳定性中的作用:具有冷变性和热变性的 3D 显式水蛋白模型。

Role of hydrophobic hydration in protein stability: a 3D water-explicit protein model exhibiting cold and heat denaturation.

机构信息

Fischell Department of Bioengineering, University of Maryland, College Park, Maryland 20742, United States.

出版信息

J Phys Chem B. 2012 Jul 19;116(28):8095-104. doi: 10.1021/jp3039175. Epub 2012 Jul 10.

Abstract

We investigate the microscopic mechanism of cold and heat denaturation using a 3D lattice model of a hydrated protein in which water is represented explicitly. The water model, which incorporates directional bonding and tetrahedral geometry, captures many aspects of water thermodynamics and properly describes hydrophobic hydration around apolar solutes because the hydrogen bonding rules in the model were gleaned from off-lattice atomistic simulations of water around representative protein structures. By incorporating local chain stiffness in the protein model, a homopolymer can fold into a β-hairpin. It is shown that the homopolymer can be folded by either attractive interactions between the monomers or as a direct consequence of the entropic cost of forming interfacial hydrogen bonds in the solvent. However, cold denaturation is not observed if the collapse transition is induced by intramolecular attractions. We further find that it is the changes in hydrophobic hydration with decreasing temperature that drive cold unfolding and that the overall process is enthalpically driven, whereas heat denaturation is entropically driven.

摘要

我们使用一种水合蛋白质的 3D 晶格模型来研究冷变性和热变性的微观机制,其中明确表示了水。该水模型包含方向键合和四面体几何形状,捕获了水热力学的许多方面,并适当描述了非极性溶质周围的疏水性水合作用,因为模型中的氢键规则是从代表性蛋白质结构周围的非格子原子模拟中提取的。通过在蛋白质模型中包含局部链刚度,均聚物可以折叠成β发夹。结果表明,均聚物可以通过单体之间的吸引力折叠,也可以直接归因于在溶剂中形成界面氢键的熵成本。然而,如果折叠转变是由分子内吸引力引起的,则不会观察到冷变性。我们进一步发现,导致冷变性的是疏水性水合作用随温度降低而发生的变化,整个过程是由焓驱动的,而热变性是由熵驱动的。

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