Department of Biology, University of Bergen, Bergen, Norway.
ISME J. 2012 Dec;6(12):2188-98. doi: 10.1038/ismej.2012.67. Epub 2012 Jul 5.
Kelp forests worldwide are known as hotspots for macroscopic biodiversity and primary production, yet very little is known about the biodiversity and roles of microorganisms in these ecosystems. Secondary production by heterotrophic bacteria associated to kelp is important in the food web as a link between kelp primary production and kelp forest consumers. The aim of this study was to investigate the relationship between bacterial diversity and two important processes in this ecosystem; bacterial secondary production and primary succession on kelp surfaces. To address this, kelp, Laminaria hyperborea, from southwestern Norway was sampled at different geographical locations and during an annual cycle. Pyrosequencing (454-sequencing) of amplicons of the 16S rRNA gene of bacteria was used to study bacterial diversity. Incorporation of tritiated thymidine was used as a measure of bacterial production. Our data show that bacterial diversity (richness and evenness) increases with the age of the kelp surface, which corresponds to the primary succession of its bacterial communities. Higher evenness of bacterial operational taxonomical units (OTUs) is linked to higher bacterial production. Owing to the dominance of a few abundant OTUs, kelp surface biofilm communities may be characterized as low-diversity habitats. This is the first detailed study of kelp-associated bacterial communities using high-throughput sequencing and it extends current knowledge on microbial community assembly and dynamics on living surfaces.
世界范围内的海带林被认为是宏观生物多样性和初级生产力的热点地区,但对于这些生态系统中的微生物多样性和作用知之甚少。与海带相关的异养细菌的次生生产在食物网中作为海带初级生产和海带林消费者之间的联系非常重要。本研究的目的是调查细菌多样性与该生态系统中两个重要过程之间的关系;细菌次生生产和海带表面的初级演替。为了解决这个问题,从挪威西南部的不同地理位置和年度周期中采集了海带,Laminaria hyperborea。使用细菌 16S rRNA 基因扩增子的焦磷酸测序(454 测序)来研究细菌多样性。氚标记的胸腺嘧啶掺入被用作细菌产量的衡量标准。我们的数据表明,细菌多样性(丰富度和均匀度)随着海带表面年龄的增加而增加,这与细菌群落的初级演替相对应。细菌操作分类单元(OTU)更高的均匀度与更高的细菌产量相关。由于少数丰富的 OTU 的优势,海带表面生物膜群落可能具有低多样性的特征。这是首次使用高通量测序对海带相关细菌群落进行的详细研究,扩展了关于生活表面微生物群落组装和动态的现有知识。