• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

地理结构种群中的溯祖过程与谱系过程。

The coalescent and the genealogical process in geographically structured population.

作者信息

Notohara M

机构信息

Department of Biology, Faculty of Science, Kyushu University, Fukuoka, Japan.

出版信息

J Math Biol. 1990;29(1):59-75. doi: 10.1007/BF00173909.

DOI:10.1007/BF00173909
PMID:2277236
Abstract

We shall extend Kingman's coalescent to the geographically structured population model with migration among colonies. It is described by a continuous-time Markov chain, which is proved to be a dual process of the diffusion process of stepping-stone model. We shall derive a system of equations for the spatial distribution of a common ancestor of sampled genes from colonies and the mean time to getting to one common ancestor. These equations are solved in three particular models; a two-population model, the island model and the one-dimensional stepping-stone model with symmetric nearest-neighbour migration.

摘要

我们将把金曼合并模型扩展到具有殖民地间迁移的地理结构种群模型。它由一个连续时间马尔可夫链描述,该链被证明是踏脚石模型扩散过程的对偶过程。我们将推导关于来自殖民地的抽样基因共同祖先的空间分布以及达到一个共同祖先的平均时间的方程组。这些方程在三个特定模型中求解:双种群模型、岛屿模型和具有对称最近邻迁移的一维踏脚石模型。

相似文献

1
The coalescent and the genealogical process in geographically structured population.地理结构种群中的溯祖过程与谱系过程。
J Math Biol. 1990;29(1):59-75. doi: 10.1007/BF00173909.
2
The coalescent in two colonies with symmetric migration.具有对称迁移的两个群体中的溯祖过程
J Math Biol. 1993;31(8):841-51. doi: 10.1007/BF00168049.
3
A separation-of-timescales approach to the coalescent in a continuous population.连续种群中溯祖过程的时间尺度分离方法。
Genetics. 2004 Dec;168(4):2227-44. doi: 10.1534/genetics.103.022830.
4
Ancestries of a recombining diploid population.一个重组二倍体群体的祖先。
J Math Biol. 2016 Jan;72(1-2):363-408. doi: 10.1007/s00285-015-0886-z. Epub 2015 Apr 30.
5
The number of segregating sites in a sample of DNA sequences from a geographically structured population.来自具有地理结构的种群的DNA序列样本中的分离位点数量。
J Math Biol. 1997 Dec;36(2):188-200. doi: 10.1007/s002850050097.
6
When and where was the most recent common ancestor?
J Math Biol. 2002 Mar;44(3):253-75. doi: 10.1007/s002850100122.
7
The coalescent in an island model of population subdivision with variation among demes.具有种群间差异的岛屿种群细分模型中的溯祖过程。
Theor Popul Biol. 2001 Mar;59(2):133-44. doi: 10.1006/tpbi.2000.1495.
8
The coalescence time of sampled genes in the structured coalescent model.结构化合并模型中采样基因的合并时间。
Theor Popul Biol. 2006 Nov;70(3):289-99. doi: 10.1016/j.tpb.2006.05.005. Epub 2006 May 26.
9
A coalescent dual process in a Moran model with genic selection, and the lambda coalescent limit.具有基因选择的莫兰模型中的合并对偶过程及λ合并极限。
Theor Popul Biol. 2010 Sep;78(2):77-92. doi: 10.1016/j.tpb.2010.05.004.
10
Coalescent approximation for structured populations in a stationary random environment.平稳随机环境下结构化种群的合并近似法。
Theor Popul Biol. 2010 Nov;78(3):192-9. doi: 10.1016/j.tpb.2010.06.008. Epub 2010 Jul 7.

引用本文的文献

1
Fine-Resolution Asymmetric Migration Estimation.高分辨率非对称迁移估计
bioRxiv. 2025 May 30:2025.05.29.656894. doi: 10.1101/2025.05.29.656894.
2
Evolution and transmission dynamics of wild poliovirus in Pakistan and Afghanistan (2012-2023).2012 - 2023年巴基斯坦和阿富汗野生脊髓灰质炎病毒的进化与传播动态
Nat Commun. 2025 Jun 4;16(1):5170. doi: 10.1038/s41467-025-60432-x.
3
Bayesian phylodynamic inference of population dynamics with dormancy.具有休眠的种群动态的贝叶斯系统发育动力学推断

本文引用的文献

1
Lines of descent in the diffusion approximation of neutral Wright-Fisher models.中性赖特-费希尔模型扩散近似中的世系线
Theor Popul Biol. 1980 Feb;17(1):37-50. doi: 10.1016/0040-5809(80)90013-1.
2
The strong-migration limit in geographically structured populations.地理结构种群中的强迁移极限
J Math Biol. 1980 Apr;9(2):101-14. doi: 10.1007/BF00275916.
3
Convergence to genetically uniform state in stepping stone models of population genetics.
J Math Biol. 1980 Nov;10(3):281-94. doi: 10.1007/BF00276987.
Proc Natl Acad Sci U S A. 2025 May 6;122(18):e2501394122. doi: 10.1073/pnas.2501394122. Epub 2025 May 2.
4
Bayesian Inference of Pathogen Phylogeography using the Structured Coalescent Model.使用结构化合并模型对病原体系统地理学进行贝叶斯推断
PLoS Comput Biol. 2025 Apr 21;21(4):e1012995. doi: 10.1371/journal.pcbi.1012995. eCollection 2025 Apr.
5
Bayesian phylodynamic inference of population dynamics with dormancy.具有休眠的群体动态的贝叶斯系统发育动力学推断
bioRxiv. 2025 Jan 22:2025.01.19.633741. doi: 10.1101/2025.01.19.633741.
6
Effects of Social Structure on Effective Population Size Change Estimates.社会结构对有效种群大小变化估计的影响。
Evol Appl. 2025 Jan 14;18(1):e70063. doi: 10.1111/eva.70063. eCollection 2025 Jan.
7
Ignoring population structure in hominin evolutionary models can lead to the inference of spurious admixture events.在古人类进化模型中忽略种群结构可能会导致推断出虚假的混合事件。
Nat Ecol Evol. 2025 Feb;9(2):225-236. doi: 10.1038/s41559-024-02591-6. Epub 2024 Dec 13.
8
EXACT PHYLODYNAMIC LIKELIHOOD VIA STRUCTURED MARKOV GENEALOGY PROCESSES.通过结构化马尔可夫谱系过程实现的精确系统发育动力学似然性
ArXiv. 2025 Jan 16:arXiv:2405.17032v2.
9
Data integration in Bayesian phylogenetics.贝叶斯系统发育学中的数据整合。
Annu Rev Stat Appl. 2023;10:353-377. doi: 10.1146/annurev-statistics-033021-112532. Epub 2022 Sep 28.
10
Efficient Bayesian inference under the multispecies coalescent with migration.具有迁移的多物种合并下的有效贝叶斯推断。
Proc Natl Acad Sci U S A. 2023 Oct 31;120(44):e2310708120. doi: 10.1073/pnas.2310708120. Epub 2023 Oct 23.
4
Line-of-descent and genealogical processes, and their applications in population genetics models.系谱和族谱过程及其在群体遗传学模型中的应用。
Theor Popul Biol. 1984 Oct;26(2):119-64. doi: 10.1016/0040-5809(84)90027-3.
5
Dual processes and an invariance result for exchangeable models in population genetics.
J Math Biol. 1985;23(1):103-18. doi: 10.1007/BF00276560.
6
Counting genealogical trees.
J Math Biol. 1987;25(4):423-31. doi: 10.1007/BF00277166.
7
The population genealogy of the infinitely--many neutral alleles model.无限多个中性等位基因模型的群体谱系
J Math Biol. 1987;25(4):381-91. doi: 10.1007/BF00277163.
8
The birth process with immigration, and the genealogical structure of large populations.伴随移民的生育过程以及大规模人口的谱系结构。
J Math Biol. 1987;25(2):161-8. doi: 10.1007/BF00276387.
9
The coalescent in two partially isolated diffusion populations.两个部分隔离的扩散种群中的溯祖过程。
Genet Res. 1988 Dec;52(3):213-22. doi: 10.1017/s0016672300027683.
10
The coalescent process in models with selection and recombination.具有选择和重组的模型中的合并过程。
Genetics. 1988 Nov;120(3):831-40. doi: 10.1093/genetics/120.3.831.