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转录因子:从增强子结合到发育控制。

Transcription factors: from enhancer binding to developmental control.

机构信息

Developmental Biology Unit, European Molecular Biology Laboratory, D-69117 Heidelberg, Germany.

出版信息

Nat Rev Genet. 2012 Sep;13(9):613-26. doi: 10.1038/nrg3207. Epub 2012 Aug 7.

DOI:10.1038/nrg3207
PMID:22868264
Abstract

Developmental progression is driven by specific spatiotemporal domains of gene expression, which give rise to stereotypically patterned embryos even in the presence of environmental and genetic variation. Views of how transcription factors regulate gene expression are changing owing to recent genome-wide studies of transcription factor binding and RNA expression. Such studies reveal patterns that, at first glance, seem to contrast with the robustness of the developmental processes they encode. Here, we review our current knowledge of transcription factor function from genomic and genetic studies and discuss how different strategies, including extensive cooperative regulation (both direct and indirect), progressive priming of regulatory elements, and the integration of activities from multiple enhancers, confer specificity and robustness to transcriptional regulation during development.

摘要

发育进程是由特定的时空基因表达域驱动的,即使在环境和遗传变异的情况下,也能产生典型模式化的胚胎。由于最近对转录因子结合和 RNA 表达的全基因组研究,人们对转录因子如何调节基因表达的观点正在发生变化。这些研究揭示的模式,乍一看,似乎与它们所编码的发育过程的稳健性形成对比。在这里,我们从基因组和遗传研究综述了我们目前对转录因子功能的认识,并讨论了不同的策略,包括广泛的合作调控(直接和间接的)、调控元件的逐步启动,以及来自多个增强子的活动的整合,如何在发育过程中赋予转录调控特异性和稳健性。

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本文引用的文献

1
Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding.揭示特定背景下转录因子结合的顺式调控序列要求。
Genome Res. 2012 Oct;22(10):2018-30. doi: 10.1101/gr.132811.111. Epub 2012 Apr 25.
2
Spatial partitioning of the regulatory landscape of the X-inactivation centre.X 染色体失活中心调控景观的空间分隔。
Nature. 2012 Apr 11;485(7398):381-5. doi: 10.1038/nature11049.
3
Topological domains in mammalian genomes identified by analysis of chromatin interactions.哺乳动物基因组中通过分析染色质相互作用而鉴定的拓扑结构域。
MADS结构域转录因子C末端区域的结构紊乱和独特基序在不同分类群中是保守的。
PLoS One. 2025 Aug 22;20(8):e0330098. doi: 10.1371/journal.pone.0330098. eCollection 2025.
4
DNA Sequence Perplexity Reveals Evolutionarily Conserved Patterns in cis-Regulatory Regions Across Diverse Species.DNA序列复杂性揭示了不同物种顺式调控区域中进化上保守的模式。
Biochem Genet. 2025 Aug 21. doi: 10.1007/s10528-025-11231-y.
5
fSuSiE enables fine-mapping of QTLs from genome-scale molecular profiles.fSuSiE能够对来自基因组规模分子图谱的数量性状基因座进行精细定位。
bioRxiv. 2025 Aug 17:2025.08.17.670732. doi: 10.1101/2025.08.17.670732.
6
prdm1a drives a fate switch between hair cells of different mechanosensory organs.prdm1a驱动不同机械感觉器官毛细胞之间的命运转换。
Nat Commun. 2025 Aug 18;16(1):7662. doi: 10.1038/s41467-025-62942-0.
7
The Impact of Tokenizer Selection in Genomic Language Models.基因组语言模型中分词器选择的影响
bioRxiv. 2025 Jul 26:2024.09.09.612081. doi: 10.1101/2024.09.09.612081.
8
EPI-DynFusion: enhancer-promoter interaction prediction model based on sequence features and dynamic fusion mechanisms.EPI-DynFusion:基于序列特征和动态融合机制的增强子-启动子相互作用预测模型。
Front Genet. 2025 Jul 23;16:1614222. doi: 10.3389/fgene.2025.1614222. eCollection 2025.
9
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Nucleic Acids Res. 2025 Jul 19;53(14). doi: 10.1093/nar/gkaf669.
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4
Metazoan promoters: emerging characteristics and insights into transcriptional regulation.后生动物启动子:转录调控的新特征和新见解。
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6
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7
A transcription factor collective defines cardiac cell fate and reflects lineage history.转录因子集体定义了心脏细胞的命运,并反映了谱系历史。
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8
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Dev Dyn. 2012 Jan;241(1):169-89. doi: 10.1002/dvdy.22728. Epub 2011 Aug 30.