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细胞类型特异性增强子的选择与功能。

The selection and function of cell type-specific enhancers.

作者信息

Heinz Sven, Romanoski Casey E, Benner Christopher, Glass Christopher K

机构信息

Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, San Diego, California 92037, USA.

Department of Cellular and Molecular Medicine, University of California, San Diego, 9500 Gilman Drive, La Jolla, San Diego, California 92093, USA.

出版信息

Nat Rev Mol Cell Biol. 2015 Mar;16(3):144-54. doi: 10.1038/nrm3949. Epub 2015 Feb 4.

DOI:10.1038/nrm3949
PMID:25650801
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4517609/
Abstract

The human body contains several hundred cell types, all of which share the same genome. In metazoans, much of the regulatory code that drives cell type-specific gene expression is located in distal elements called enhancers. Although mammalian genomes contain millions of potential enhancers, only a small subset of them is active in a given cell type. Cell type-specific enhancer selection involves the binding of lineage-determining transcription factors that prime enhancers. Signal-dependent transcription factors bind to primed enhancers, which enables these broadly expressed factors to regulate gene expression in a cell type-specific manner. The expression of genes that specify cell type identity and function is associated with densely spaced clusters of active enhancers known as super-enhancers. The functions of enhancers and super-enhancers are influenced by, and affect, higher-order genomic organization.

摘要

人体包含数百种细胞类型,所有这些细胞都共享相同的基因组。在后生动物中,驱动细胞类型特异性基因表达的许多调控密码位于称为增强子的远端元件中。尽管哺乳动物基因组包含数百万个潜在的增强子,但其中只有一小部分在特定细胞类型中是活跃的。细胞类型特异性增强子的选择涉及决定细胞谱系的转录因子与增强子的结合。信号依赖的转录因子与已被激活的增强子结合,这使得这些广泛表达的因子能够以细胞类型特异性的方式调节基因表达。决定细胞类型特征和功能的基因的表达与称为超级增强子的紧密排列的活性增强子簇相关。增强子和超级增强子的功能受到高阶基因组组织的影响,并对其产生影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866d/4517609/b3e8099b97da/nihms709706f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866d/4517609/5f0366d5fc29/nihms709706f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866d/4517609/75bad6b00829/nihms709706f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866d/4517609/e3ff134bd629/nihms709706f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866d/4517609/e0ca04b8cbe6/nihms709706f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866d/4517609/b3e8099b97da/nihms709706f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866d/4517609/5f0366d5fc29/nihms709706f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866d/4517609/75bad6b00829/nihms709706f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866d/4517609/e3ff134bd629/nihms709706f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866d/4517609/e0ca04b8cbe6/nihms709706f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866d/4517609/b3e8099b97da/nihms709706f5.jpg

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Environment drives selection and function of enhancers controlling tissue-specific macrophage identities.环境驱动着控制组织特异性巨噬细胞身份的增强子的选择和功能。
Cell. 2014 Dec 4;159(6):1327-40. doi: 10.1016/j.cell.2014.11.023.
2
Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.组织驻留巨噬细胞增强子景观由局部微环境塑造。
Cell. 2014 Dec 4;159(6):1312-26. doi: 10.1016/j.cell.2014.11.018.
3
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers.
SCoTCH-seq技术揭示5-羟甲基胞嘧啶编码跨DNA链的调控信息。
Proc Natl Acad Sci U S A. 2025 Aug 5;122(31):e2512204122. doi: 10.1073/pnas.2512204122. Epub 2025 Jul 31.
4
TFAP2A enhances tumor stemness and promotes metastasis in pancreatic ductal adenocarcinoma.TFAP2A增强胰腺导管腺癌的肿瘤干性并促进转移。
iScience. 2025 Jul 5;28(8):113060. doi: 10.1016/j.isci.2025.113060. eCollection 2025 Aug 15.
5
Transcriptional programs of cell identity and p53-induced stress responses are associated with distinctive features of spatial genome organization.细胞身份的转录程序和p53诱导的应激反应与空间基因组组织的独特特征相关。
Nucleic Acids Res. 2025 Jul 8;53(13). doi: 10.1093/nar/gkaf607.
6
Projection-TAGs enable multiplex projection tracing and multi-modal profiling of projection neurons.投射标签实现了投射神经元的多重投射追踪和多模态分析。
Nat Commun. 2025 Jul 1;16(1):5557. doi: 10.1038/s41467-025-60360-w.
7
Acetylation-Mediated Epigenetic Consequences for Biological Control and Cancer.乙酰化介导的生物调控与癌症的表观遗传学后果
Results Probl Cell Differ. 2025;75:25-69. doi: 10.1007/978-3-031-91459-1_2.
8
Adversarial attack of sequence-free enhancer prediction identifies chromatin architecture.无序列增强子预测的对抗性攻击可识别染色质结构。
Bioinformatics. 2025 Jul 1;41(7). doi: 10.1093/bioinformatics/btaf371.
9
Impaired SREBP1-mediated regulation of lipid metabolism promotes inflammation in chronic endometritis.固醇调节元件结合蛋白1(SREBP1)介导的脂质代谢调节受损会促进慢性子宫内膜炎中的炎症反应。
Front Immunol. 2025 Jun 5;16:1547949. doi: 10.3389/fimmu.2025.1547949. eCollection 2025.
10
Super-enhancer-mediated circRNAs exhibit high splicing circularization diversity and transcriptional activity.超级增强子介导的环状RNA表现出高度的剪接环化多样性和转录活性。
Nucleic Acids Res. 2025 Jun 6;53(11). doi: 10.1093/nar/gkaf505.
新生RNA分析揭示了哺乳动物启动子和增强子起始区域的统一结构。
Nat Genet. 2014 Dec;46(12):1311-20. doi: 10.1038/ng.3142. Epub 2014 Nov 10.
4
Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes.细胞身份基因的调控发生在哺乳动物染色体的绝缘区域。
Cell. 2014 Oct 9;159(2):374-387. doi: 10.1016/j.cell.2014.09.030.
5
Enhancer RNA facilitates NELF release from immediate early genes.增强子 RNA 促进立即早期基因中 NELF 的释放。
Mol Cell. 2014 Oct 2;56(1):29-42. doi: 10.1016/j.molcel.2014.08.023. Epub 2014 Sep 25.
6
Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming.在细胞分化和重编程过程中,核小体占据率在关键调控区域发生局部变化。
Nat Commun. 2014 Aug 27;5:4719. doi: 10.1038/ncomms5719.
7
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Cell Rep. 2014 Jun 12;7(5):1443-1455. doi: 10.1016/j.celrep.2014.04.042. Epub 2014 May 22.