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发育基因的调控景观。

The regulatory landscapes of developmental genes.

机构信息

Swiss Institute for Cancer Research (ISREC), School of Life Sciences, Federal Institute of Technology, Lausanne, 1015 Lausanne, Switzerland

Department of Genetics and Evolution, University of Geneva, 1211 Geneva 4, Switzerland.

出版信息

Development. 2020 Feb 3;147(3):dev171736. doi: 10.1242/dev.171736.

DOI:10.1242/dev.171736
PMID:32014867
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7033717/
Abstract

Regulatory landscapes have been defined in vertebrates as large DNA segments containing diverse enhancer sequences that produce coherent gene transcription. These genomic platforms integrate multiple cellular signals and hence can trigger pleiotropic expression of developmental genes. Identifying and evaluating how these chromatin regions operate may be difficult as the underlying regulatory mechanisms can be as unique as the genes they control. In this brief article and accompanying poster, we discuss some of the ways in which regulatory landscapes operate, illustrating these mechanisms using genes important for vertebrate development as examples. We also highlight some of the techniques available to researchers for analysing regulatory landscapes.

摘要

调控景观在脊椎动物中被定义为包含多种增强子序列的大片段 DNA,这些序列能够产生一致的基因转录。这些基因组平台整合了多种细胞信号,因此可以触发发育基因的多效性表达。由于调控机制可能与它们所控制的基因一样独特,因此识别和评估这些染色质区域的功能可能具有挑战性。在这篇简短的文章和配套的海报中,我们讨论了调控景观发挥作用的一些方式,并使用对脊椎动物发育很重要的基因作为例子来说明这些机制。我们还强调了研究人员分析调控景观的一些可用技术。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1483/7033717/d4f05b626f84/develop-147-171736-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1483/7033717/d4f05b626f84/develop-147-171736-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1483/7033717/d4f05b626f84/develop-147-171736-g1.jpg

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Elife. 2020 Apr 17;9:e52962. doi: 10.7554/eLife.52962.
2
Chromatin topology, condensates and gene regulation: shifting paradigms or just a phase?染色质拓扑结构、凝聚物和基因调控:范式转变还是只是一个阶段?
Development. 2019 Sep 25;146(19):dev182766. doi: 10.1242/dev.182766.
3
Decreased Enhancer-Promoter Proximity Accompanying Enhancer Activation.伴随着增强子激活的增强子-启动子接近度降低。
Sci Adv. 2025 Jul 25;11(30):eadv1885. doi: 10.1126/sciadv.adv1885.
4
Prediction of target genes and functional types of cis-regulatory modules in the human genome reveals their distinct properties.人类基因组中顺式调控模块的靶基因预测及其功能类型揭示了它们的独特性质。
BMC Biol. 2025 Jul 15;23(1):211. doi: 10.1186/s12915-025-02313-9.
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A cardiac transcriptional enhancer is repurposed during regeneration to activate an anti-proliferative program.一种心脏转录增强子在再生过程中被重新利用,以激活一个抗增殖程序。
Development. 2025 Feb 15;152(4). doi: 10.1242/dev.204458. Epub 2025 Feb 17.
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