European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Zurich University of Applied Sciences (ZHAW), Zurich CH-8021, Switzerland.
PLoS Comput Biol. 2019 Feb 8;15(2):e1006791. doi: 10.1371/journal.pcbi.1006791. eCollection 2019 Feb.
BioJava is an open-source project that provides a Java library for processing biological data. The project aims to simplify bioinformatic analyses by implementing parsers, data structures, and algorithms for common tasks in genomics, structural biology, ontologies, phylogenetics, and more. Since 2012, we have released two major versions of the library (4 and 5) that include many new features to tackle challenges with increasingly complex macromolecular structure data. BioJava requires Java 8 or higher and is freely available under the LGPL 2.1 license. The project is hosted on GitHub at https://github.com/biojava/biojava. More information and documentation can be found online on the BioJava website (http://www.biojava.org) and tutorial (https://github.com/biojava/biojava-tutorial). All inquiries should be directed to the GitHub page or the BioJava mailing list (http://lists.open-bio.org/mailman/listinfo/biojava-l).
BioJava 是一个开源项目，提供了一个用于处理生物数据的 Java 库。该项目旨在通过实现解析器、数据结构和算法，来简化生物信息学分析，这些算法和结构适用于基因组学、结构生物学、本体论、系统发生学等常见任务。自 2012 年以来，我们已经发布了两个主要版本的库（4 和 5），其中包含了许多新功能，以解决日益复杂的大分子结构数据带来的挑战。BioJava 需要 Java 8 或更高版本，并且根据 LGPL 2.1 许可证免费提供。该项目托管在 GitHub 上，网址为 https://github.com/biojava/biojava。更多信息和文档可以在 BioJava 网站（http://www.biojava.org）和教程（https://github.com/biojava/biojava-tutorial）上找到。所有咨询都应指向 GitHub 页面或 BioJava 邮件列表（http://lists.open-bio.org/mailman/listinfo/biojava-l）。
