嗜热古菌 Thermococcus sp. 株 CL1 的全基因组序列，该菌从采自热液喷口的多毛环节动物 Paralvinella sp. 体内分离得到。
Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.
机构信息
Department of Food Science and Biotechnology, Institute of Life Sciences and Resources, Kyung Hee University, Yongin, Republic of Korea.
出版信息
J Bacteriol. 2012 Sep;194(17):4769-70. doi: 10.1128/JB.01016-12.
Abstract
Thermococcus sp. strain CL1 is a hyperthermophilic, anaerobic, and heterotrophic archaeon isolated from a Paralvinella sp. polychaete worm living on an active deep-sea hydrothermal sulfide chimney on the Cleft Segment of the Juan de Fuca Ridge. To further understand the distinct characteristics of this archaeon at the genome level, its genome was completely sequenced and analyzed. Here, we announce the complete genome sequence (1,950,313 bp) of Thermococcus sp. strain CL1, with a focus on H(2)- and energy-producing capabilities and its amino acid biosynthesis and acquisition in an extreme habitat.
摘要
热球菌株 CL1 是一种高温、厌氧、异养古细菌，从栖息在胡安·德富卡海脊裂谷 C 段热液喷口活动深海硫化物烟囱上的 Paralvinella sp. 多毛环节蠕虫中分离得到。为了进一步从基因组水平了解这种古细菌的独特特征，我们对其基因组进行了完全测序和分析。在此，我们公布了热球菌株 CL1 的完整基因组序列（1950313bp），重点介绍了其在极端生境中的 H₂ 和能量产生能力及其氨基酸生物合成和获取。
相似文献
1
Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent.
J Bacteriol. 2012 Sep;194(17):4769-70. doi: 10.1128/JB.01016-12.
2
Thermococcus paralvinellae sp. nov. and Thermococcus cleftensis sp. nov. of hyperthermophilic heterotrophs from deep-sea hydrothermal vents.
Int J Syst Evol Microbiol. 2014 Nov;64(Pt 11):3655-3659. doi: 10.1099/ijs.0.066100-0. Epub 2014 Jul 31.
3
Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp. strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge.
J Bacteriol. 2012 Aug;194(16):4434-5. doi: 10.1128/JB.00824-12.
4
sp. nov., a hyperthermophilic and piezophilic archaeon isolated from a deep-sea hydrothermal vent at the Mid-Atlantic Ridge.
Int J Syst Evol Microbiol. 2021 Jul;71(7). doi: 10.1099/ijsem.0.004853.
5
Thermococcus prieurii sp. nov., a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent.
Int J Syst Evol Microbiol. 2013 Aug;63(Pt 8):2920-2926. doi: 10.1099/ijs.0.026419-0. Epub 2013 Jan 25.
6
sp. nov., a piezotolerant, hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent chimney in the Southwest Indian Ridge.
Int J Syst Evol Microbiol. 2021 Aug;71(8). doi: 10.1099/ijsem.0.004934.
7
Thermococcus nautili sp. nov., a hyperthermophilic archaeon isolated from a hydrothermal deep-sea vent.
Int J Syst Evol Microbiol. 2014 May;64(Pt 5):1802-1810. doi: 10.1099/ijs.0.060376-0. Epub 2014 Feb 20.
8
Thermococcus piezophilus sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise.
Syst Appl Microbiol. 2016 Oct;39(7):440-444. doi: 10.1016/j.syapm.2016.08.003. Epub 2016 Aug 26.
9
Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP.
J Bacteriol. 2011 Mar;193(6):1481-2. doi: 10.1128/JB.01490-10. Epub 2011 Jan 7.
10
Thermococcus marinus sp. nov. and Thermococcus radiotolerans sp. nov., two hyperthermophilic archaea from deep-sea hydrothermal vents that resist ionizing radiation.
Extremophiles. 2004 Jun;8(3):219-27. doi: 10.1007/s00792-004-0380-9. Epub 2004 Feb 27.
引用本文的文献
1
A moderately thermophilic origin of a novel family of marine group II euryarchaeota from deep ocean.
iScience. 2023 Aug 17;26(9):107664. doi: 10.1016/j.isci.2023.107664. eCollection 2023 Sep 15.
2
Novel polyadenylylation-dependent neutralization mechanism of the HEPN/MNT toxin/antitoxin system.
Nucleic Acids Res. 2020 Nov 4;48(19):11054-11067. doi: 10.1093/nar/gkaa855.
3
Nucleic and Amino Acid Sequences Support Structure-Based Viral Classification.
J Virol. 2017 Mar 29;91(8). doi: 10.1128/JVI.02275-16. Print 2017 Apr 15.
4
Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes.
Biochimie. 2015 Nov;118:313-21. doi: 10.1016/j.biochi.2015.07.008. Epub 2015 Jul 10.
5
Characterization of the frhAGB-encoding hydrogenase from a non-methanogenic hyperthermophilic archaeon.
Extremophiles. 2015 Jan;19(1):109-18. doi: 10.1007/s00792-014-0689-y. Epub 2014 Aug 21.
6
Diversity of CRISPR systems in the euryarchaeal Pyrococcales.
RNA Biol. 2013 May;10(5):659-70. doi: 10.4161/rna.23927. Epub 2013 Feb 19.
本文引用的文献
1
SignalP 4.0: discriminating signal peptides from transmembrane regions.
Nat Methods. 2011 Sep 29;8(10):785-6. doi: 10.1038/nmeth.1701.
2
Production of hydrogen from α-1,4- and β-1,4-linked saccharides by marine hyperthermophilic Archaea.
Appl Environ Microbiol. 2011 May;77(10):3169-73. doi: 10.1128/AEM.01366-10. Epub 2011 Mar 18.
3
CRISPR elements in the Thermococcales: evidence for associated horizontal gene transfer in Pyrococcus furiosus.
J Appl Genet. 2009;50(4):421-30. doi: 10.1007/BF03195703.
4
Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea.
Genome Biol. 2009;10(6):R70. doi: 10.1186/gb-2009-10-6-r70. Epub 2009 Jun 26.
5
Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth.
BMC Genomics. 2008 May 27;9:247. doi: 10.1186/1471-2164-9-247.
6
A sodium ion-dependent A1AO ATP synthase from the hyperthermophilic archaeon Pyrococcus furiosus.
FEBS J. 2007 Aug;274(15):3928-38. doi: 10.1111/j.1742-4658.2007.05925.x. Epub 2007 Jul 5.
7
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W52-7. doi: 10.1093/nar/gkm360. Epub 2007 May 30.
8
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
9
Identifying bacterial genes and endosymbiont DNA with Glimmer.
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
10
InterProScan--an integration platform for the signature-recognition methods in InterPro.
Bioinformatics. 2001 Sep;17(9):847-8. doi: 10.1093/bioinformatics/17.9.847.
Zotero 插件