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揭示磷脂酶 A 介导的细胞膜磷脂降解的结构、机制和生理学见解。

Structural, mechanistic, and physiological insights into phospholipase A-mediated membrane phospholipid degradation in .

机构信息

Institute of Molecular Enzyme Technology, Heinrich Heine University Düsseldorf, Forschungszentrum Jülich GmbH, Jülich, Germany.

Institute of Biological Information Processing - Structural Biochemistry (IBI-7: Structural Biochemistry), Forschungszentrum Jülich GmbH, Jülich, Germany.

出版信息

Elife. 2022 May 10;11:e72824. doi: 10.7554/eLife.72824.

Abstract

Cells steadily adapt their membrane glycerophospholipid (GPL) composition to changing environmental and developmental conditions. While the regulation of membrane homeostasis via GPL synthesis in bacteria has been studied in detail, the mechanisms underlying the controlled degradation of endogenous GPLs remain unknown. Thus far, the function of intracellular phospholipases A (PLAs) in GPL remodeling (Lands cycle) in bacteria is not clearly established. Here, we identified the first cytoplasmic membrane-bound phospholipase A (PlaF) from , which might be involved in the Lands cycle. PlaF is an important virulence factor, as the Δ mutant showed strongly attenuated virulence in and macrophages. We present a 2.0-Å-resolution crystal structure of PlaF, the first structure that reveals homodimerization of a single-pass transmembrane (TM) full-length protein. PlaF dimerization, mediated solely through the intermolecular interactions of TM and juxtamembrane regions, inhibits its activity. The dimerization site and the catalytic sites are linked by an intricate ligand-mediated interaction network, which might explain the product (fatty acid) feedback inhibition observed with the purified PlaF protein. We used molecular dynamics simulations and configurational free energy computations to suggest a model of PlaF activation through a coupled monomerization and tilting of the monomer in the membrane, which constrains the active site cavity into contact with the GPL substrates. Thus, these data show the importance of the PlaF-mediated GPL remodeling pathway for virulence and could pave the way for the development of novel therapeutics targeting PlaF.

摘要

细胞会不断调整其膜甘油磷脂(GPL)组成以适应不断变化的环境和发育条件。虽然细菌中通过 GPL 合成来调节膜内稳态的机制已被详细研究,但内源性 GPL 受控降解的机制仍不清楚。到目前为止,细胞内磷脂酶 A(PLA)在细菌中 GPL 重塑(Lands 循环)中的功能尚未明确。在这里,我们从 中鉴定出第一个细胞质膜结合磷脂酶 A(PlaF),它可能参与了 Lands 循环。PlaF 是一种重要的毒力因子,因为 Δ 突变体在 和巨噬细胞中的毒力明显减弱。我们展示了 PlaF 的 2.0 Å 分辨率晶体结构,这是第一个揭示单次跨膜(TM)全长蛋白同源二聚化的结构。PlaF 通过 TM 和跨膜区域的分子间相互作用介导二聚化,从而抑制其活性。二聚化位点和催化位点通过复杂的配体介导的相互作用网络连接,这可能解释了纯化的 PlaF 蛋白观察到的产物(脂肪酸)反馈抑制。我们使用分子动力学模拟和构象自由能计算来提出一种通过单体在膜中的单体化和倾斜的耦合来激活 PlaF 的模型,该模型将活性位点腔约束为与 GPL 底物接触。因此,这些数据表明 PlaF 介导的 GPL 重塑途径对毒力很重要,并为靶向 PlaF 的新型治疗方法的开发铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f610/9132575/3e1fc281b8bb/elife-72824-fig1.jpg

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