• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

创伤与脓毒症中的计算生物学和系统生物学:现状与未来展望

Computational and systems biology in trauma and sepsis: current state and future perspectives.

作者信息

An Gary, Nieman Gary, Vodovotz Yoram

出版信息

Int J Burns Trauma. 2012;2(1):1-10. Epub 2012 Feb 1.

PMID:22928162
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3415970/
Abstract

Trauma, often accompanied by hemorrhage, is a leading cause of death worldwide, often leading to inflammation-related late complications that include sepsis and multiple organ failure. These secondary complications are a manifestation of the complexity of biological responses elicited by trauma/hemorrhage, responses that span most, if not all, cell types, tissues, and organ systems. This daunting complexity at the patient level is manifest by the near total dearth of available therapeutics, and we suggest that this dire condition is due in large part to the lack of a rational, systems-oriented framework for drug development, clinical trial design, in-hospital diagnostics, and post-hospital care. We have further suggested that mechanistic computational modeling can form the basis of such a rational framework, given the maturity of systems biology/computational biology. Herein, we briefly summarize the state of the art of these approaches, and highlight the biological insights and novel hypotheses derived from these approaches. We propose a rational framework for transitioning through the currently fragmented process from identification of biological networks that are potential therapeutic targets, through clinical trial design, to personalized diagnosis and care. Insights derived from systems and computational biology in trauma and sepsis include the centrality of Damage-Associated Molecular Pattern molecules as drivers of both beneficial and detrimental inflammation, along with a novel view of multiple organ dysfunction as a cascade of containment failures with distinct implications for therapy. Finally, we suggest how these insights might be best implemented to drive transformational change in the fields of trauma and sepsis.

摘要

创伤,常伴有出血,是全球主要的死亡原因,常导致包括败血症和多器官功能衰竭在内的与炎症相关的晚期并发症。这些继发性并发症是创伤/出血引发的生物反应复杂性的一种表现,这种反应涉及大多数(如果不是全部)细胞类型、组织和器官系统。在患者层面,这种令人望而生畏的复杂性表现为几乎完全缺乏可用的治疗方法,我们认为这种严峻状况在很大程度上是由于缺乏一个合理的、以系统为导向的药物研发、临床试验设计、院内诊断和院后护理框架。鉴于系统生物学/计算生物学的成熟,我们进一步提出,机制计算建模可以构成这样一个合理框架的基础。在此,我们简要总结这些方法的现状,并突出从这些方法中获得的生物学见解和新假设。我们提出了一个合理框架,用于从识别作为潜在治疗靶点的生物网络,经过临床试验设计,到个性化诊断和护理,贯穿当前碎片化的过程。创伤和败血症领域中系统和计算生物学的见解包括损伤相关分子模式分子作为有益和有害炎症驱动因素的核心地位,以及将多器官功能障碍视为一系列遏制失败的新观点,这对治疗具有不同的意义。最后,我们建议如何最好地实施这些见解,以推动创伤和败血症领域的变革性变化。

相似文献

1
Computational and systems biology in trauma and sepsis: current state and future perspectives.创伤与脓毒症中的计算生物学和系统生物学:现状与未来展望
Int J Burns Trauma. 2012;2(1):1-10. Epub 2012 Feb 1.
2
Sepsis Care Pathway 2019.2019年脓毒症护理路径
Qatar Med J. 2019 Nov 7;2019(2):4. doi: 10.5339/qmj.2019.qccc.4. eCollection 2019.
3
In silico modeling: methods and applications to trauma and sepsis.计算机模拟:创伤和脓毒症的方法和应用。
Crit Care Med. 2013 Aug;41(8):2008-14. doi: 10.1097/CCM.0b013e31829a6eb4.
4
Toward computational identification of multiscale "tipping points" in acute inflammation and multiple organ failure.针对急性炎症和多器官衰竭的多尺度“临界点”的计算识别。
Ann Biomed Eng. 2012 Nov;40(11):2414-24. doi: 10.1007/s10439-012-0565-9. Epub 2012 Apr 21.
5
Systemic Inflammatory Response Syndrome全身炎症反应综合征
6
Systems Biology Applications to Decipher Mechanisms and Novel Biomarkers in CNS Trauma系统生物学在解析中枢神经系统创伤机制及新型生物标志物中的应用
7
Translational systems approaches to the biology of inflammation and healing.炎症和愈合生物学的转化系统方法。
Immunopharmacol Immunotoxicol. 2010 Jun;32(2):181-95. doi: 10.3109/08923970903369867.
8
Sepsis: Something old, something new, and a systems view.脓毒症:旧有认识、新的认识和系统观点。
J Crit Care. 2012 Jun;27(3):314.e1-11. doi: 10.1016/j.jcrc.2011.05.025. Epub 2011 Jul 27.
9
Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).大分子拥挤现象:化学与物理邂逅生物学(瑞士阿斯科纳,2012年6月10日至14日)
Phys Biol. 2013 Aug;10(4):040301. doi: 10.1088/1478-3975/10/4/040301. Epub 2013 Aug 2.
10
Folic acid supplementation and malaria susceptibility and severity among people taking antifolate antimalarial drugs in endemic areas.在流行地区,服用抗叶酸抗疟药物的人群中,叶酸补充剂与疟疾易感性和严重程度的关系。
Cochrane Database Syst Rev. 2022 Feb 1;2(2022):CD014217. doi: 10.1002/14651858.CD014217.

引用本文的文献

1
A multiscale inflammatory map: linking individual stress to societal dysfunction.一张多尺度炎症图谱:将个体压力与社会功能障碍联系起来。
Front Sci. 2024;1. doi: 10.3389/fsci.2023.1239462. Epub 2024 Mar 11.
2
Multi-Omics Endotypes in ICU Sepsis-Induced Immunosuppression.重症监护病房中脓毒症诱导的免疫抑制的多组学内型
Microorganisms. 2023 Apr 25;11(5):1119. doi: 10.3390/microorganisms11051119.
3
Omics of endothelial cell dysfunction in sepsis.脓毒症中内皮细胞功能障碍的组学研究
Vasc Biol. 2022 Apr 7;4(1):R15-R34. doi: 10.1530/VB-22-0003. eCollection 2022 Feb 1.
4
A Multidimensional Bioinformatic Platform for the Study of Human Response to Surgery.多维生物信息学平台研究人类对手术的反应。
Ann Surg. 2022 Jun 1;275(6):1094-1102. doi: 10.1097/SLA.0000000000005429. Epub 2022 Mar 3.
5
Nested active learning for efficient model contextualization and parameterization: pathway to generating simulated populations using multi-scale computational models.用于高效模型情境化和参数化的嵌套主动学习:使用多尺度计算模型生成模拟群体的途径。
Simulation. 2021 Apr;97(4):287-296. doi: 10.1177/0037549720975075. Epub 2020 Dec 14.
6
A putative "chemokine switch" that regulates systemic acute inflammation in humans.一种可能的“趋化因子开关”,调节人类全身急性炎症。
Sci Rep. 2021 May 6;11(1):9703. doi: 10.1038/s41598-021-88936-8.
7
Dynamics of Systemic Inflammation as a Function of Developmental Stage in Pediatric Acute Liver Failure.儿科急性肝衰竭发育阶段系统性炎症的动力学。
Front Immunol. 2021 Jan 15;11:610861. doi: 10.3389/fimmu.2020.610861. eCollection 2020.
8
Derivation and Validation of Novel Phenotypes of Multiple Organ Dysfunction Syndrome in Critically Ill Children.危重症儿童多器官功能障碍综合征新表型的推导和验证。
JAMA Netw Open. 2020 Aug 3;3(8):e209271. doi: 10.1001/jamanetworkopen.2020.9271.
9
Acute Inflammation in Traumatic Brain Injury and Polytrauma Patients Using Network Analysis.颅脑创伤和多发伤患者的急性炎症的网络分析。
Shock. 2020 Jan;53(1):24-34. doi: 10.1097/SHK.0000000000001349.
10
Inflammation Following Traumatic Brain Injury in Humans: Insights from Data-Driven and Mechanistic Models into Survival and Death.人类创伤性脑损伤后的炎症:从数据驱动模型和机制模型中获得的关于生存与死亡的见解
Front Pharmacol. 2016 Sep 27;7:342. doi: 10.3389/fphar.2016.00342. eCollection 2016.

本文引用的文献

1
Physiologic responses to severe hemorrhagic shock and the genesis of cardiovascular collapse: can irreversibility be anticipated?严重失血性休克的生理反应和心血管崩溃的发生:是否可以预见不可逆转性?
J Surg Res. 2012 Nov;178(1):358-69. doi: 10.1016/j.jss.2011.12.015. Epub 2012 Mar 10.
2
A two-compartment mathematical model of endotoxin-induced inflammatory and physiologic alterations in swine.内毒素诱导猪炎症和生理改变的双室数学模型。
Crit Care Med. 2012 Apr;40(4):1052-63. doi: 10.1097/CCM.0b013e31823e986a.
3
The search for effective therapy for sepsis: back to the drawing board?寻找脓毒症的有效治疗方法:要从头开始吗?
JAMA. 2011 Dec 21;306(23):2614-5. doi: 10.1001/jama.2011.1853.
4
Drug for severe sepsis is withdrawn from market, fails to reduce mortality.用于严重脓毒症的药物退出市场,未能降低死亡率。
JAMA. 2011 Dec 14;306(22):2439-40. doi: 10.1001/jama.2011.1755.
5
A genomic storm in critically injured humans.危重症患者的基因组风暴。
J Exp Med. 2011 Dec 19;208(13):2581-90. doi: 10.1084/jem.20111354. Epub 2011 Nov 21.
6
Sepsis: Something old, something new, and a systems view.脓毒症:旧有认识、新的认识和系统观点。
J Crit Care. 2012 Jun;27(3):314.e1-11. doi: 10.1016/j.jcrc.2011.05.025. Epub 2011 Jul 27.
7
Use of advanced machine-learning techniques for noninvasive monitoring of hemorrhage.使用先进的机器学习技术进行出血的无创监测。
J Trauma. 2011 Jul;71(1 Suppl):S25-32. doi: 10.1097/TA.0b013e3182211601.
8
Development and validation of a novel molecular biomarker diagnostic test for the early detection of sepsis.开发和验证一种新型分子生物标志物诊断检测方法,用于早期检测脓毒症。
Crit Care. 2011 Jun 20;15(3):R149. doi: 10.1186/cc10274.
9
A dynamic view of trauma/hemorrhage-induced inflammation in mice: principal drivers and networks.创伤/出血诱导的炎症在小鼠体内的动态变化:主要驱动因素和网络。
PLoS One. 2011 May 10;6(5):e19424. doi: 10.1371/journal.pone.0019424.
10
In Silico Augmentation of the Drug Development Pipeline: Examples from the study of Acute Inflammation.药物研发流程的计算机模拟增强:来自急性炎症研究的实例
Drug Dev Res. 2011 Mar 1;72(2):187-200. doi: 10.1002/ddr.20415.