• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
Concordant chemical reaction networks and the Species-Reaction Graph.协调化学反应网络和物种反应图。
Math Biosci. 2013 Jan;241(1):1-23. doi: 10.1016/j.mbs.2012.08.002. Epub 2012 Aug 21.
2
Sharper graph-theoretical conditions for the stabilization of complex reaction networks.用于复杂反应网络稳定化的更严格的图论条件。
Math Biosci. 2015 Apr;262:10-27. doi: 10.1016/j.mbs.2015.01.002. Epub 2015 Jan 17.
3
Concordant chemical reaction networks.协调一致的化学反应网络。
Math Biosci. 2012 Dec;240(2):92-113. doi: 10.1016/j.mbs.2012.05.004. Epub 2012 May 30.
4
Chemical reaction network approaches to Biochemical Systems Theory.生化系统理论中的化学反应网络方法。
Math Biosci. 2015 Nov;269:135-52. doi: 10.1016/j.mbs.2015.08.022. Epub 2015 Sep 10.
5
Reaction Network Analysis of Metabolic Insulin Signaling.代谢胰岛素信号反应网络分析。
Bull Math Biol. 2022 Sep 27;84(11):129. doi: 10.1007/s11538-022-01087-3.
6
Oscillations in biochemical reaction networks arising from pairs of subnetworks.生化反应网络中由两个子网产生的波动。
Bull Math Biol. 2011 Oct;73(10):2277-304. doi: 10.1007/s11538-010-9620-6. Epub 2011 Jan 22.
7
A Deficiency-Based Approach to Parametrizing Positive Equilibria of Biochemical Reaction Systems.基于缺陷的方法对生化反应系统正平衡点的参数化。
Bull Math Biol. 2019 Apr;81(4):1143-1172. doi: 10.1007/s11538-018-00562-0. Epub 2018 Dec 31.
8
Computing weakly reversible linearly conjugate chemical reaction networks with minimal deficiency.计算具有最小亏缺的弱可逆线性共轭化学反应网络。
Math Biosci. 2013 Jan;241(1):88-98. doi: 10.1016/j.mbs.2012.09.008. Epub 2012 Oct 16.
9
Independent Decompositions of Chemical Reaction Networks.化学反应网络的独立分解。
Bull Math Biol. 2021 May 18;83(7):76. doi: 10.1007/s11538-021-00906-3.
10
Graph-theoretic conditions for zero-eigenvalue Turing instability in general chemical reaction networks.一般化学反应网络中零特征值图论 Turing 不稳定性的条件。
Math Biosci Eng. 2013 Aug;10(4):1207-26. doi: 10.3934/mbe.2013.10.1207.

引用本文的文献

1
What makes a reaction network "chemical"?是什么使得一个反应网络具有“化学性”?
J Cheminform. 2022 Sep 19;14(1):63. doi: 10.1186/s13321-022-00621-8.
2
A structural approach to understanding enzymatic regulation of chemical reaction networks.一种理解酶调控化学反应网络的结构方法。
Biochem J. 2022 Jun 17;479(11):1265-1283. doi: 10.1042/BCJ20210545.
3
A numerical approach for detecting switch-like bistability in mass action chemical reaction networks with conservation laws.一种用于检测具有守恒律的质量作用化学反应网络中开关式双稳性的数值方法。
BMC Bioinformatics. 2022 Jan 4;23(1):1. doi: 10.1186/s12859-021-04477-x.
4
Maximization of information transmission influences selection of native phosphorelay architectures.信息传递的最大化影响天然磷酸化信号转导结构的选择。
PeerJ. 2021 Jun 10;9:e11558. doi: 10.7717/peerj.11558. eCollection 2021.
5
Exponential Time Decay of Solutions to Reaction-Cross-Diffusion Systems of Maxwell-Stefan Type.麦克斯韦-斯蒂芬型反应交叉扩散系统解的指数时间衰减
Arch Ration Mech Anal. 2020;235(2):1059-1104. doi: 10.1007/s00205-019-01439-9. Epub 2019 Aug 1.
6
Non-monotonic Response to Monotonic Stimulus: Regulation of Glyoxylate Shunt Gene-Expression Dynamics in Mycobacterium tuberculosis.对单调刺激的非单调反应:结核分枝杆菌中乙醛酸循环基因表达动力学的调控
PLoS Comput Biol. 2016 Feb 22;12(2):e1004741. doi: 10.1371/journal.pcbi.1004741. eCollection 2016 Feb.
7
Sharper graph-theoretical conditions for the stabilization of complex reaction networks.用于复杂反应网络稳定化的更严格的图论条件。
Math Biosci. 2015 Apr;262:10-27. doi: 10.1016/j.mbs.2015.01.002. Epub 2015 Jan 17.
8
Phosphate sink containing two-component signaling systems as tunable threshold devices.含双组分信号系统的磷酸盐汇作为可调阈值装置。
PLoS Comput Biol. 2014 Oct 30;10(10):e1003890. doi: 10.1371/journal.pcbi.1003890. eCollection 2014 Oct.
9
Split histidine kinases enable ultrasensitivity and bistability in two-component signaling networks.组氨酸激酶的分裂使双组分信号网络具有超敏性和双稳定性。
PLoS Comput Biol. 2013;9(3):e1002949. doi: 10.1371/journal.pcbi.1002949. Epub 2013 Mar 7.
10
Concordant chemical reaction networks.协调一致的化学反应网络。
Math Biosci. 2012 Dec;240(2):92-113. doi: 10.1016/j.mbs.2012.05.004. Epub 2012 May 30.

本文引用的文献

1
Concordant chemical reaction networks.协调一致的化学反应网络。
Math Biosci. 2012 Dec;240(2):92-113. doi: 10.1016/j.mbs.2012.05.004. Epub 2012 May 30.
2
Design principles for robust biochemical reaction networks: what works, what cannot work, and what might almost work.稳健生物化学反应网络的设计原则:可行的、不可行的以及可能可行的。
Math Biosci. 2011 May;231(1):39-48. doi: 10.1016/j.mbs.2011.02.012. Epub 2011 Mar 4.
3
Structural sources of robustness in biochemical reaction networks.生化反应网络稳健性的结构来源。
Science. 2010 Mar 12;327(5971):1389-91. doi: 10.1126/science.1183372.
4
Graph-theoretic criteria for injectivity and unique equilibria in general chemical reaction systems.一般化学反应系统中注入性和唯一平衡的图论标准。
Adv Appl Math. 2010 Feb 1;44(2):168-184. doi: 10.1016/j.aam.2009.07.003.
5
Robustness in glyoxylate bypass regulation.乙醛酸旁路调节的稳健性。
PLoS Comput Biol. 2009 Mar;5(3):e1000297. doi: 10.1371/journal.pcbi.1000297. Epub 2009 Mar 6.
6
Multiple equilibria in complex chemical reaction networks: extensions to entrapped species models.复杂化学反应网络中的多重平衡:对截留物种模型的扩展
Syst Biol (Stevenage). 2006 Jul;153(4):179-86. doi: 10.1049/ip-syb:20050093.
7
Understanding bistability in complex enzyme-driven reaction networks.理解复杂酶驱动反应网络中的双稳性。
Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8697-702. doi: 10.1073/pnas.0602767103. Epub 2006 May 30.

协调化学反应网络和物种反应图。

Concordant chemical reaction networks and the Species-Reaction Graph.

机构信息

The William G. Lowrie Department of Chemical & Biomolecular Engineering, Ohio State University, 140 W. 19th Avenue, Columbus, OH 43210, USA.

出版信息

Math Biosci. 2013 Jan;241(1):1-23. doi: 10.1016/j.mbs.2012.08.002. Epub 2012 Aug 21.

DOI:10.1016/j.mbs.2012.08.002
PMID:22940368
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4701587/
Abstract

In a recent paper it was shown that, for chemical reaction networks possessing a subtle structural property called concordance, dynamical behavior of a very circumscribed (and largely stable) kind is enforced, so long as the kinetics lies within the very broad and natural weakly monotonic class. In particular, multiple equilibria are precluded, as are degenerate positive equilibria. Moreover, under certain circumstances, also related to concordance, all real eigenvalues associated with a positive equilibrium are negative. Although concordance of a reaction network can be decided by readily available computational means, we show here that, when a nondegenerate network's Species-Reaction Graph satisfies certain mild conditions, concordance and its dynamical consequences are ensured. These conditions are weaker than earlier ones invoked to establish kinetic system injectivity, which, in turn, is just one ramification of network concordance. Because the Species-Reaction Graph resembles pathway depictions often drawn by biochemists, results here expand the possibility of inferring significant dynamical information directly from standard biochemical reaction diagrams.

摘要

在最近的一篇论文中表明,对于具有称为协调性的微妙结构性质的化学反应网络,只要动力学处于非常广泛和自然的弱单调类中,就会强制实施非常有限(且在很大程度上稳定)的动力学行为。特别是,排除了多个平衡点,也排除了简并正平衡点。此外,在某些情况下,也与协调性有关,与正平衡点相关的所有实特征值均为负。尽管可以通过现成的计算手段来确定反应网络的协调性,但我们在这里表明,当非简并网络的“物种-反应图”满足某些温和条件时,协调性及其动力学后果就得到了保证。这些条件比以前为建立动力学系统注入性而提出的条件要弱,而动力学系统注入性反过来又是网络协调性的一个分支。由于“物种-反应图”类似于生物化学家经常绘制的途径图,因此这里的结果扩展了直接从标准生化反应图推断重要动力学信息的可能性。