Warkentin Matthew, Badeau Ryan, Hopkins Jesse B, Thorne Robert E
Physics Department, Cornell University, Ithaca, NY 14853, USA.
Acta Crystallogr D Biol Crystallogr. 2012 Sep;68(Pt 9):1108-17. doi: 10.1107/S0907444912021361. Epub 2012 Aug 18.
The spatial distribution of radiation damage (assayed by increases in atomic B factors) to thaumatin and urease crystals at temperatures ranging from 25 to 300 K is reported. The nature of the damage changes dramatically at approximately 180 K. Above this temperature the role of solvent diffusion is apparent in thaumatin crystals, as solvent-exposed turns and loops are especially sensitive. In urease, a flap covering the active site is the most sensitive part of the molecule and nearby loops show enhanced sensitivity. Below 180 K sensitivity is correlated with poor local packing, especially in thaumatin. At all temperatures, the component of the damage that is spatially uniform within the unit cell accounts for more than half of the total increase in the atomic B factors and correlates with changes in mosaicity. This component may arise from lattice-level, rather than local, disorder. The effects of primary structure on radiation sensitivity are small compared with those of tertiary structure, local packing, solvent accessibility and crystal contacts.
报道了在25至300K温度范围内,奇异果甜蛋白和脲酶晶体辐射损伤(通过原子B因子增加来测定)的空间分布。损伤的性质在约180K时发生显著变化。在此温度以上,溶剂扩散在奇异果甜蛋白晶体中的作用明显,因为暴露于溶剂的转角和环特别敏感。在脲酶中,覆盖活性位点的一个瓣片是分子中最敏感的部分,附近的环显示出增强的敏感性。低于180K时,敏感性与局部堆积不良相关,尤其是在奇异果甜蛋白中。在所有温度下,晶胞内空间均匀的损伤成分占原子B因子总增加量的一半以上,并且与镶嵌性变化相关。该成分可能源于晶格水平而非局部无序。与三级结构、局部堆积、溶剂可及性和晶体接触相比,一级结构对辐射敏感性的影响较小。