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生物医学研究资助合作中的社区结构证据。

Evidence of community structure in biomedical research grant collaborations.

机构信息

Division of Biomedical Informatics, Department of Biostatistics, College of Public Health, University of Kentucky, Lexington, KY 40536, USA.

出版信息

J Biomed Inform. 2013 Feb;46(1):40-6. doi: 10.1016/j.jbi.2012.08.002. Epub 2012 Sep 7.

Abstract

Recent studies have clearly demonstrated a shift towards collaborative research and team science approaches across a spectrum of disciplines. Such collaborative efforts have also been acknowledged and nurtured by popular extramurally funded programs including the Clinical Translational Science Award (CTSA) conferred by the National Institutes of Health. Since its inception, the number of CTSA awardees has steadily increased to 60 institutes across 30 states. One of the objectives of CTSA is to accelerate translation of research from bench to bedside to community and train a new genre of researchers under the translational research umbrella. Feasibility of such a translation implicitly demands multi-disciplinary collaboration and mentoring. Networks have proven to be convenient abstractions for studying research collaborations. The present study is a part of the CTSA baseline study and investigates existence of possible community-structure in Biomedical Research Grant Collaboration (BRGC) networks across data sets retrieved from the internally developed grants management system, the Automated Research Information Administrator (ARIA) at the University of Arkansas for Medical Sciences (UAMS). Fastgreedy and link-community community-structure detection algorithms were used to investigate the presence of non-overlapping and overlapping community-structure and their variation across years 2006 and 2009. A surrogate testing approach in conjunction with appropriate discriminant statistics, namely: the modularity index and the maximum partition density is proposed to investigate whether the community-structure of the BRGC networks were different from those generated by certain types of random graphs. Non-overlapping as well as overlapping community-structure detection algorithms indicated the presence of community-structure in the BRGC network. Subsequent, surrogate testing revealed that random graph models considered in the present study may not necessarily be appropriate generative mechanisms of the community-structure in the BRGC networks. The discrepancy in the community-structure between the BRGC networks and the random graph surrogates was especially pronounced at 2009 as opposed to 2006 indicating a possible shift towards team-science and formation of non-trivial modular patterns with time. The results also clearly demonstrate presence of inter-departmental and multi-disciplinary collaborations in BRGC networks. While the results are presented on BRGC networks as a part of the CTSA baseline study at UAMS, the proposed methodologies are as such generic with potential to be extended across other CTSA organizations. Understanding the presence of community-structure can supplement more traditional network analysis as they're useful in identifying research teams and their inter-connections as opposed to the role of individual nodes in the network. Such an understanding can be a critical step prior to devising meaningful interventions for promoting team-science, multi-disciplinary collaborations, cross-fertilization of ideas across research teams and identifying suitable mentors. Understanding the temporal evolution of these communities may also be useful in CTSA evaluation.

摘要

最近的研究清楚地表明,跨学科领域的合作研究和团队科学方法正在发生转变。这种合作努力也得到了包括美国国立卫生研究院(NIH)授予的临床转化科学奖(CTSA)在内的流行的外部资助计划的认可和培育。自成立以来,CTSA 的获奖者数量稳步增加到 30 个州的 60 个机构。CTSA 的目标之一是加速从实验室到床边再到社区的研究转化,并在转化研究的保护伞下培养新一代研究人员。这种转化的可行性隐含地需要多学科合作和指导。网络已被证明是研究研究合作的便利抽象。本研究是 CTSA 基线研究的一部分,调查了从内部开发的赠款管理系统(UAMS 的自动化研究信息管理员(ARIA))中检索到的数据集的生物医学研究资助合作(BRGC)网络中是否存在可能的社区结构。Fastgreedy 和链路社区结构检测算法用于研究非重叠和重叠社区结构及其在 2006 年和 2009 年的变化。结合适当的判别统计数据(即模块度指数和最大分区密度)提出了一种替代测试方法,以研究 BRGC 网络的社区结构是否与某些类型的随机图生成的社区结构不同。非重叠和重叠社区结构检测算法表明 BRGC 网络中存在社区结构。随后,替代测试表明,本研究中考虑的随机图模型不一定是 BRGC 网络中社区结构的合适生成机制。BRGC 网络与随机图替代之间的社区结构差异在 2009 年尤为明显,而在 2006 年则相反,这表明随着时间的推移,可能会向团队科学转变,并形成非平凡的模块化模式。结果还清楚地表明,BRGC 网络中存在部门间和多学科合作。虽然结果是作为 UAMS 的 CTSA 基线研究的一部分在 BRGC 网络上呈现的,但所提出的方法在原则上是通用的,有可能扩展到其他 CTSA 组织。了解社区结构的存在可以补充更传统的网络分析,因为它们有助于识别研究团队及其相互联系,而不是网络中单个节点的作用。这种理解可以是设计促进团队科学、多学科合作、跨研究团队思想交叉以及识别合适导师的有意义干预措施的关键步骤。了解这些社区的时间演变也可能对 CTSA 评估有用。

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