Division of Applied Mathematics, Brown University, Providence, Rhode Island, USA.
Biophys J. 2012 Sep 19;103(6):1130-40. doi: 10.1016/j.bpj.2012.08.017.
We present simulation results on the self-assembly behavior of sickle hemoglobin (HbS). A coarse-grained HbS model, which contains hydrophilic and hydrophobic particles explicitly, is constructed to match the structural properties and physical description of HbS. The hydrophobic interactions are shown to be necessary with chirality being the main driver for the formation of HbS fibers. In the absence of chain chirality, only small self-assembled aggregates are observed whereas self-assembled elongated steplike bundle microstructures appear when we include chain chirality. We also investigate the effect of confinement on self-assembly, and find that elongated fibers-similar to open-space ones-can be obtained in hard confinement domains but cannot be formed within compliant red blood cell (RBC) domains under the same assumptions. We show, however, that by placing explicitly HbS fibers inside the RBCs and subjecting them to linear elongation and bending, we obtain different types of sickle-shaped RBCs as observed in sickle cell anemia.
我们展示了镰刀状血红蛋白 (HbS) 自组装行为的模拟结果。构建了一个粗粒化的 HbS 模型,其中明确包含亲水和疏水粒子,以匹配 HbS 的结构特性和物理描述。结果表明,疏水相互作用是必需的,手性是形成 HbS 纤维的主要驱动力。在没有链手性的情况下,仅观察到小的自组装聚集体,而当我们包含链手性时,则出现自组装的拉长阶跃状束微观结构。我们还研究了受限对自组装的影响,发现类似于开放空间的拉长纤维可以在硬受限域中获得,但在相同假设下,不能在顺应性红细胞 (RBC) 域内形成。然而,我们表明,通过将 HbS 纤维明确放置在 RBC 内,并对其进行线性拉伸和弯曲,我们可以获得类似于镰状细胞贫血中观察到的不同类型的镰状 RBC。