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TOCCATA:一个定制的碳全相关谱 NMR 代谢组学数据库。

TOCCATA: a customized carbon total correlation spectroscopy NMR metabolomics database.

机构信息

Institute of Molecular Biophysics, Florida State University, Tallahassee, Florida 32306, United States.

出版信息

Anal Chem. 2012 Nov 6;84(21):9395-401. doi: 10.1021/ac302197e. Epub 2012 Oct 11.

Abstract

A customized metabolomics NMR database, TOCCATA, is introduced, which uses (13)C chemical shift information for the reliable identification of metabolites, their spin systems, and isomeric states. TOCCATA, whose information was derived from the BMRB and HMDB databases and the literature, currently contains 463 compounds and 801 spin systems, and it can be used through a publicly accessible web server. TOCCATA allows the identification of metabolites in the submillimolar concentration range from (13)C-(13)C total correlation spectroscopy experiments of complex mixtures, which is demonstrated for an Escherichia coli cell lysate, a carbohydrate mixture, and an amino acid mixture, all of which were uniformly (13)C-labeled.

摘要

引入了一个定制的代谢组学 NMR 数据库 TOCCATA,它利用 (13)C 化学位移信息来可靠地鉴定代谢物、它们的自旋系统和同分异构体状态。TOCCATA 的信息来自 BMRB 和 HMDB 数据库以及文献,目前包含 463 种化合物和 801 个自旋系统,可通过公共访问的网络服务器使用。TOCCATA 允许从复杂混合物的 (13)C-(13)C 全相关光谱实验中鉴定亚毫摩尔浓度范围内的代谢物,这在大肠杆菌细胞裂解物、碳水化合物混合物和氨基酸混合物的实验中得到了证明,所有这些混合物都进行了均匀的 (13)C 标记。

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