• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用贝叶斯推理对双阱光镊实验进行自功率谱和互功率谱分析。

Auto- and cross-power spectral analysis of dual trap optical tweezer experiments using Bayesian inference.

作者信息

von Hansen Yann, Mehlich Alexander, Pelz Benjamin, Rief Matthias, Netz Roland R

机构信息

Department of Physics, Freie Universität Berlin, 14195 Berlin, Germany.

出版信息

Rev Sci Instrum. 2012 Sep;83(9):095116. doi: 10.1063/1.4753917.

DOI:10.1063/1.4753917
PMID:23020428
Abstract

The thermal fluctuations of micron-sized beads in dual trap optical tweezer experiments contain complete dynamic information about the viscoelastic properties of the embedding medium and-if present-macromolecular constructs connecting the two beads. To quantitatively interpret the spectral properties of the measured signals, a detailed understanding of the instrumental characteristics is required. To this end, we present a theoretical description of the signal processing in a typical dual trap optical tweezer experiment accounting for polarization crosstalk and instrumental noise and discuss the effect of finite statistics. To infer the unknown parameters from experimental data, a maximum likelihood method based on the statistical properties of the stochastic signals is derived. In a first step, the method can be used for calibration purposes: We propose a scheme involving three consecutive measurements (both traps empty, first one occupied and second empty, and vice versa), by which all instrumental and physical parameters of the setup are determined. We test our approach for a simple model system, namely a pair of unconnected, but hydrodynamically interacting spheres. The comparison to theoretical predictions based on instantaneous as well as retarded hydrodynamics emphasizes the importance of hydrodynamic retardation effects due to vorticity diffusion in the fluid. For more complex experimental scenarios, where macromolecular constructs are tethered between the two beads, the same maximum likelihood method in conjunction with dynamic deconvolution theory will in a second step allow one to determine the viscoelastic properties of the tethered element connecting the two beads.

摘要

在双阱光镊实验中,微米级珠子的热涨落包含了关于包埋介质粘弹性特性以及(如果存在的话)连接两个珠子的大分子结构的完整动态信息。为了定量解释测量信号的光谱特性,需要详细了解仪器特性。为此,我们给出了一个典型双阱光镊实验中信号处理的理论描述,该描述考虑了偏振串扰和仪器噪声,并讨论了有限统计的影响。为了从实验数据中推断未知参数,我们推导了一种基于随机信号统计特性的最大似然方法。第一步,该方法可用于校准目的:我们提出了一个涉及三次连续测量的方案(两个阱都为空、第一个阱被占据且第二个阱为空、反之亦然),通过该方案可以确定装置的所有仪器和物理参数。我们针对一个简单的模型系统,即一对未连接但存在流体动力学相互作用的球体,测试了我们的方法。与基于瞬时以及延迟流体动力学的理论预测进行比较,突出了流体中涡度扩散导致的流体动力学延迟效应的重要性。对于更复杂的实验场景,即两个珠子之间连接有大分子结构的情况,第二步中,同样的最大似然方法结合动态反卷积理论将能够确定连接两个珠子的连接元件的粘弹性特性。

相似文献

1
Auto- and cross-power spectral analysis of dual trap optical tweezer experiments using Bayesian inference.使用贝叶斯推理对双阱光镊实验进行自功率谱和互功率谱分析。
Rev Sci Instrum. 2012 Sep;83(9):095116. doi: 10.1063/1.4753917.
2
Calibrating optical tweezers with Bayesian inference.用贝叶斯推理校准光镊
Opt Express. 2013 Dec 16;21(25):31578-90. doi: 10.1364/OE.21.031578.
3
Calibration of optical traps by dual trapping of one bead.双捕获一个微球对光阱的校准。
Opt Lett. 2013 Nov 15;38(22):4923-6. doi: 10.1364/OL.38.004923.
4
High-resolution dual-trap optical tweezers with differential detection: minimizing the influence of measurement noise.具有差分检测功能的高分辨率双阱光镊:最小化测量噪声的影响。
Cold Spring Harb Protoc. 2009 Oct;2009(10):pdb.ip75. doi: 10.1101/pdb.ip75.
5
Counter-propagating dual-trap optical tweezers based on linear momentum conservation.基于线性动量守恒的反向传播双阱光镊
Rev Sci Instrum. 2013 Apr;84(4):043104. doi: 10.1063/1.4799289.
6
High-resolution dual-trap optical tweezers with differential detection: data collection and instrument calibration.具有差分检测功能的高分辨率双阱光镊:数据采集与仪器校准
Cold Spring Harb Protoc. 2009 Oct;2009(10):pdb.ip74. doi: 10.1101/pdb.ip74.
7
Measuring the complete force field of an optical trap.测量光阱的完整力场。
Opt Lett. 2011 Apr 1;36(7):1260-2. doi: 10.1364/OL.36.001260.
8
Active-passive calibration of optical tweezers in viscoelastic media.粘弹性介质中光镊的主动-被动校准
Rev Sci Instrum. 2010 Jan;81(1):015103. doi: 10.1063/1.3280222.
9
High-resolution dual-trap optical tweezers with differential detection: alignment of instrument components.具有差分检测功能的高分辨率双阱光镊:仪器组件的对准
Cold Spring Harb Protoc. 2009 Oct;2009(10):pdb.ip76. doi: 10.1101/pdb.ip76.
10
High-resolution dual-trap optical tweezers with differential detection: instrument design.具有差分检测功能的高分辨率双阱光镊:仪器设计
Cold Spring Harb Protoc. 2009 Oct;2009(10):pdb.ip73. doi: 10.1101/pdb.ip73.

引用本文的文献

1
Accurate Memory Kernel Extraction from Discretized Time-Series Data.从离散时间序列数据中准确提取记忆核
J Chem Theory Comput. 2024 Apr 23;20(8):3061-3068. doi: 10.1021/acs.jctc.3c01289. Epub 2024 Apr 11.
2
Direct observation of chemo-mechanical coupling in DnaK by single-molecule force experiments.通过单分子力实验直接观察 DnaK 中的化学-机械偶联。
Biophys J. 2022 Dec 6;121(23):4729-4739. doi: 10.1016/j.bpj.2022.09.042. Epub 2022 Oct 3.
3
Unraveling the Mechanics of a Repeat-Protein Nanospring: From Folding of Individual Repeats to Fluctuations of the Superhelix.
解析重复蛋白纳米弹簧的力学原理:从单个重复单元的折叠到超螺旋的波动
ACS Nano. 2022 Mar 22;16(3):3895-3905. doi: 10.1021/acsnano.1c09162. Epub 2022 Mar 8.
4
Slow Transition Path Times Reveal a Complex Folding Barrier in a Designed Protein.缓慢的转变路径时间揭示了一种设计蛋白质中的复杂折叠障碍。
Front Chem. 2020 Dec 7;8:587824. doi: 10.3389/fchem.2020.587824. eCollection 2020.
5
Propagation and attenuation of mechanical signals in ultrasoft 2D solids.机械信号在超软二维固体中的传播与衰减。
Sci Adv. 2020 Sep 11;6(37). doi: 10.1126/sciadv.aba6601. Print 2020 Sep.
6
Bioorthogonal protein-DNA conjugation methods for force spectroscopy.用于力谱学的生物正交蛋白质-DNA 偶联方法。
Sci Rep. 2019 Sep 25;9(1):13820. doi: 10.1038/s41598-019-49843-1.
7
Multiplexing molecular tension sensors reveals piconewton force gradient across talin-1.多重分子张力传感器揭示了整联蛋白-1 上皮诺牛尔力梯度。
Nat Methods. 2017 Nov;14(11):1090-1096. doi: 10.1038/nmeth.4431. Epub 2017 Sep 18.
8
Nanomechanics of the substrate binding domain of Hsp70 determine its allosteric ATP-induced conformational change.热休克蛋白 70 的基质结合结构域的纳米机械特性决定了其变构的 ATP 诱导构象变化。
Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):6040-6045. doi: 10.1073/pnas.1619843114. Epub 2017 May 22.
9
α-Actinin/titin interaction: A dynamic and mechanically stable cluster of bonds in the muscle Z-disk.α-辅肌动蛋白/肌联蛋白相互作用:肌肉 Z 盘内动态且机械稳定的键簇。
Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):1015-1020. doi: 10.1073/pnas.1612681114. Epub 2017 Jan 17.
10
Subnanometre enzyme mechanics probed by single-molecule force spectroscopy.通过单分子力谱探测亚纳米级酶力学。
Nat Commun. 2016 Feb 24;7:10848. doi: 10.1038/ncomms10848.